update OSD parsing: effervescence, drop ordered factors #321
Workflow file for this run
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| on: | |
| schedule: | |
| - cron: '0 6 * * 1' | |
| pull_request: | |
| branches: | |
| - main | |
| paths-ignore: | |
| - .github/workflows/R-CMD-check.yml | |
| - .github/workflows/refresh-extdata.yml | |
| workflow_dispatch: | |
| name: refresh-extdata | |
| jobs: | |
| render: | |
| name: refresh-extdata | |
| runs-on: ${{ matrix.config.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: ubuntu-latest, r: 'release'} | |
| env: | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: '0' | |
| clean: 'false' | |
| - name: Get branch name (manual) | |
| if: github.event_name != 'pull_request' | |
| shell: bash | |
| run: echo "BRANCH_NAME=$(echo ${GITHUB_REF#refs/heads/} | tr / -)" >> $GITHUB_ENV | |
| - name: Get branch name (pull request) | |
| if: github.event_name == 'pull_request' | |
| shell: bash | |
| run: echo "BRANCH_NAME=$(echo ${GITHUB_HEAD_REF} | tr / -)" >> $GITHUB_ENV | |
| - name: Configure git | |
| run: | | |
| git config user.email "[email protected]" | |
| git config user.name "SoilKnowledgeBot" | |
| git pull --no-rebase origin ${{ env.BRANCH_NAME }} | |
| echo ${{ env.BRANCH_NAME }} | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: any::rcmdcheck, any::remotes, any::pdftools, any::rvest, any::xml2, any::aqp, any::soilDB, any::data.table, any::R.utils, any::terra | |
| needs: check | |
| - name: Install SoilKnowledgeBase | |
| run: | | |
| sudo apt install poppler-utils | |
| cd .. | |
| R CMD build SoilKnowledgeBase | |
| R CMD INSTALL SoilKnowledgeBase | |
| cd SoilKnowledgeBase/ | |
| - name: Install Rmarkdown | |
| run: Rscript -e 'install.packages("rmarkdown")' | |
| - name: Render README | |
| run: Rscript -e 'rmarkdown::render("README.Rmd")' | |
| - name: Post-processing | |
| run: | | |
| Rscript misc/OSD-error-reporting/typical-pedon.R | |
| Rscript misc/OSD-error-reporting/osd-sections.R | |
| - name: Commit results | |
| run: | | |
| git add inst/extdata/\*.txt | |
| git commit -m 'Update inst/extdata/ TXT files' || echo "No changes to commit" | |
| # git add inst/extdata/\*.html | |
| # git commit -m 'Update inst/extdata/ HTML files' || echo "No changes to commit" | |
| git add inst/extdata/\*.json | |
| git commit -m 'Update inst/extdata/ JSON files' || echo "No changes to commit" | |
| git add inst/extdata/\*.csv | |
| git commit -m 'Update inst/extdata/ CSV files' || echo "No changes to commit" | |
| git commit README.md -m 'Render README.Rmd' || echo "No changes to commit" | |
| - name: Push results | |
| run: | | |
| git push origin HEAD:${{ env.BRANCH_NAME }} || echo "No changes to commit" | |
| - name: Upload snapshot to release | |
| if: github.ref == 'refs/heads/main' && hashFiles('inst/extdata/NSSH/NSSH.pdf') != '' | |
| uses: svenstaro/upload-release-action@v2 | |
| with: | |
| repo_token: ${{ secrets.GITHUB_TOKEN }} | |
| file: inst/extdata/NSSH/NSSH.pdf | |
| tag: snapshot | |
| file_glob: true | |
| overwrite: true | |
| body: "Download the National Soil Survey Handbook (NSSH) as a single PDF. This PDF is built weekly from the latest eDirectives sources." |