GitHub - nencki-lobi/NAWA: Multiple Sclerosis and Neuromyelitis Optica Spectrum Disorder differeciation with MRI derived biomarkers (Volumetry, DWI, QSM, R2*, R1)

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Multiple Sclerosis and Neuromyelitis Optica Spectrum Disorder differeciation with MRI derived biomarkers (Volumetry, DWI, QSM, R2*, R1)

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Name		Name	Last commit message	Last commit date
Latest commit History 71 Commits
DWI		DWI
Fixel		Fixel
General		General
Other		Other
Volumtery		Volumtery
cerebral_cortex		cerebral_cortex
cluster_movie		cluster_movie
lesion_identification_DL		lesion_identification_DL
lesion_informed_tractometry		lesion_informed_tractometry
white_matter		white_matter
NAWM_tracking.sh		NAWM_tracking.sh
NAWM_tractography.sh		NAWM_tractography.sh
NAWM_tracts_substitution.py		NAWM_tracts_substitution.py
NODDI_VPL.sh		NODDI_VPL.sh
Network_analysis_cortex_tracts.py		Network_analysis_cortex_tracts.py
Network_analysis_tutorial.py		Network_analysis_tutorial.py
OPLS_DA.py		OPLS_DA.py
PCA.py		PCA.py
QC.sh		QC.sh
R1_to_cifti.sh		R1_to_cifti.sh
ROC.py		ROC.py
SCT.sh		SCT.sh
SCT_analysis.sh		SCT_analysis.sh
SCT_manual_labeling.sh		SCT_manual_labeling.sh
TM_ANOVA.py		TM_ANOVA.py
Tracts_vis.py		Tracts_vis.py
Tractseg_dilation_comparison.py		Tractseg_dilation_comparison.py
UNI_denoise.sh		UNI_denoise.sh
VPL_register_extract.sh		VPL_register_extract.sh
basal_ganglia.sh		basal_ganglia.sh
bids_mp2rage.sh		bids_mp2rage.sh
bundle_load.sh		bundle_load.sh
bundle_load_plot.py		bundle_load_plot.py
calculate_FS_recon_all.sh		calculate_FS_recon_all.sh
calculate_aMWF_DTI_NODDI.sh		calculate_aMWF_DTI_NODDI.sh
ciftify.sh		ciftify.sh
convert_hcp_to_fs.sh		convert_hcp_to_fs.sh
correlations.py		correlations.py
eddy_quad.sh		eddy_quad.sh
fit_NODDI.sh		fit_NODDI.sh
lesion_dependent_test.py		lesion_dependent_test.py
lesion_filling.sh		lesion_filling.sh
lesion_probability_maps.sh		lesion_probability_maps.sh
lesion_tracking.sh		lesion_tracking.sh
lesion_tractography.sh		lesion_tractography.sh
parcellation_vis.py		parcellation_vis.py
random_sample_selector.py		random_sample_selector.py
readme		readme
renaming_ML.py		renaming_ML.py
tracseg_lesion_identification.sh		tracseg_lesion_identification.sh
tract_images.py		tract_images.py
tractseg.sh		tractseg.sh
vol2surface.sh		vol2surface.sh

Repository files navigation

Welcome to the NAWA project git hub page!

This project is about NMOSD IgG+ and MS patient classification.

In dedicated subfolders you will find detailed analysis scripts used in:
Jakuszyk P, Podlecka-Piętowska A, Kossowski B, Nojszewska M, Zakrzewska-Pniewska B, Juryńczyk M. 
Patterns of cerebral damage in multiple sclerosis and aquaporin-4 antibody-positive neuromyelitis 
optica spectrum disorders-major differences revealed by non-conventional imaging. 
Brain Commun. 2024 Aug 30;6(5):fcae295. doi: 10.1093/braincomms/fcae295. PMID: 39258257; PMCID: PMC11384145.