Code

Change labels#55

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Merged

NathanMolinier merged 28 commits intomainneuropoly/totalspineseg:mainfrom change-labelsneuropoly/totalspineseg:change-labelsCopy head branch name to clipboardSep 27, 2024

+1,405-514

Commits

Commits on Sep 11, 2024

• Refactor iterative labeling logic init from discs only

  Show description for 253ce5a
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  253ce5a

Commits on Sep 12, 2024

• Improve label naming for clarity in iterative_label function

  Show description for ae4e9ed
  yw7

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  ae4e9ed

• Fix labeling logic in _get_superior_output_label()

  Show description for f1182be
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  f1182be

Commits on Sep 13, 2024

• Refactor disc and vertebrae labeling process

  Show description for c96c9f0
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  c96c9f0

Commits on Sep 14, 2024

• Replace labelling schema; introduce 'extract_alternate'

  Show description for 2446f36
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  2446f36

• Fix issue by adding range labels 60-101 for extract_alternate

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  a0753a4

• Refactor label prioritization and mapping logic

  Show description for 610f2b8
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  610f2b8

• Improve disc label handling in extract_levels function

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  55aa76f

• Fix disc label mapping error in extract_levels

  Show description for 1966341
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  1966341

• Add label text options for image preview

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  22ca420

• Add preview image generation for segmentation steps 1 and 2

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  3d8a559

• Remove redundant spinal cord and canal labels

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• Remove unused 'Vertebrae' label from inference script

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• Improve label mapping for spine segmentation

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  3062368

• Fix typo in region_default_sizes definition

  Show description for 149b4c0
  yw7

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  149b4c0

• Fix indexing error in label mapping

  Show description for 56ac7c4
  yw7

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  56ac7c4

• Improve variable naming for clarity in iterative_label function

  Show description for 3eb57a7
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  3eb57a7

Commits on Sep 15, 2024

• Simplify vertebrae to output labels mapping logic

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  b4cb2ad

• Handle missing disc labels in vertebrae mapping

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  7270f83

Commits on Sep 21, 2024

• Refactor label sorting functions to improve code readability and robustness

  Show description for f17dc3b
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  f17dc3b

• Dynamically retrieve nnUNet parameters from results

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  9203640

• Refactor label mapping to match labeling algo

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  c6faf6a

• Refine help messaging for localizer segmentation

  Show description for 4b3440b
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  4b3440b

• Add support for C1 vertebra label in extract_levels

  Show description for 4eab269
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  4eab269

• Merge branch 'localizer-based-labeling' into change-labels

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• Revised spine landmark labels for consistency

  Show description for 7b890b2
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  7b890b2

• Simplify axis index array creation

  Show description for dbad232
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  dbad232

• Merge branch 'localizer-based-labeling' into change-labels

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  6cabb1a