Merge pull request #345 from neutrinoceros/tst/dep_locking

TST: rewrite testing workflows around uv.lock

.github/workflows/bleeding-edge.yaml

@@ -34,22 +34,18 @@ jobs:
         python-version: 3.13-dev
 
     - uses: astral-sh/setup-uv@v4
-      with:
-        enable-cache: true
-        cache-dependency-glob: |
-          **/requirements/tests.txt
-          **/pyproject.toml
+    - name: Configure uv
+      run: |
+        echo "UV_PYTHON_PREFERENCE=only-system" >> $GITHUB_ENV
+        echo "UV_PYTHON=3.13" >> $GITHUB_ENV
+        echo "UV_PRERELEASE=allow" >> $GITHUB_ENV
+        echo "UV_EXTRA_INDEX_URL=https://pypi.anaconda.org/scientific-python-nightly-wheels/simple" >> $GITHUB_ENV
 
     - name: Build
       run: |
-        uv venv
+        uv sync --group test --extra HDF5 --no-editable
         uv pip install git+https://github.com/yt-project/yt.git
-        uv pip install .
-        uv pip install --requirement requirements/tests.txt
-
-    - run: uv pip list
 
     - name: Run Tests
       run: |
-        source .venv/bin/activate
-        pytest --color=yes -ra
+        uv run --frozen --no-editable pytest --color=yes

.github/workflows/ci.yml

@@ -35,42 +35,30 @@ jobs:
     - uses: actions/checkout@v4
     - uses: astral-sh/setup-uv@v4
       with:
-        enable-cache: true
-        cache-dependency-glob: |
-          **/requirements/tests.txt
-          **/pyproject.toml
-
-    - name: Build
-      run: |
-        uv venv --python ${{ matrix.python-version }}
-        uv pip install . --no-deps
-        uv pip install --requirement pyproject.toml --no-build ${{ matrix.install-args }}
-        uv pip install --requirement requirements/tests.txt
-
-    - run: uv pip list
+        python-version: ${{ matrix.python-version }}
 
     - name: run tests
       run: |
-        source .venv/bin/activate
-        pytest --color=yes -ra
+        uv run --group test ${{ matrix.install-args }} \
+          pytest --color=yes
 
 
   type-check:
     runs-on: ubuntu-latest
     name: type check
 
+    strategy:
+      matrix:
+        python-version:
+        - '3.10'
+        - '3.13'
+
     steps:
     - uses: actions/checkout@v4
     - uses: astral-sh/setup-uv@v4
       with:
-        enable-cache: true
-        cache-dependency-glob: |
-          **/requirements/typecheck.txt
-          **/pyproject.toml
+        python-version: ${{ matrix.python-version }}
 
-    - name: Run mypy
-      # Match minimal supported Python version
-      # to make sure we're not using unparseable syntax
+    - name: Typecheck
       run: |
-        uvx --python 3.10 --with-requirements=requirements/typecheck.txt --with . \
-        mypy src/yt_idefix
+        uv run --frozen --group typecheck mypy src

.pre-commit-config.yaml

@@ -15,6 +15,11 @@ repos:
   - id: check-executables-have-shebangs
   - id: check-toml
 
+- repo: https://github.com/astral-sh/uv-pre-commit
+  rev: 0.5.8
+  hooks:
+  - id: uv-lock
+
 - repo: https://github.com/astral-sh/ruff-pre-commit
   rev: v0.6.9
   hooks:

pyproject.toml

@@ -57,6 +57,17 @@ Documentation = "https://yt-project.org/docs/dev/"
 Source = "https://github.com/neutrinoceros/yt_idefix"
 Tracker = "https://github.com/neutrinoceros/yt_idefix/issues"
 
+[dependency-groups]
+test = [
+    "more-itertools>=8.4.0",
+    "pyaml>=17.10.0",
+    "pytest>=7.0.0",
+]
+
+typecheck = [
+    "mypy>=1.13.0",
+]
+
 [tool.hatch.build.targets.sdist]
 exclude = [".*"] # exclude dot files (.gitignore is still included)
 
@@ -103,6 +114,7 @@ warn_unreachable = true
 show_error_context = true
 
 [tool.pytest.ini_options]
+addopts = "-ra"
 filterwarnings = [
     "error",
     # already patched (but not released) upstream: