Skip to content

Issues: nextflow-io/nextflow

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

434 Open 3,000 Closed
434 Open 3,000 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

LexerNoViableAltException but script still runs
#5832 opened Mar 1, 2025 by awgymer
View channel only when parameter is set lang/operators
#5831 opened Feb 28, 2025 by gh-byounggreenwald
5
K8s client does not retry some 5xx errors executor/k8s
#5829 opened Feb 28, 2025 by bentsherman
1
ConcurrentModificationException with unclear origin
#5826 opened Feb 28, 2025 by mahesh-panchal
1
new feature: make sure conda env is intact for usage software/conda
#5824 opened Feb 28, 2025 by mewu3
2
Cannot submit job to AWS batch when the compute env of Batch is AWS EKS executor/aws-batch
#5817 opened Feb 26, 2025 by waynewang117
Typo in the container declaration leads to null and nextflow using a local tool installation error-improvements
#5814 opened Feb 25, 2025 by FriederikeHanssen
1
4
exitStatusReadTimeoutMillis
#5813 opened Feb 24, 2025 by machine-moon
Unclear error message when using an unknown entrypoint
#5811 opened Feb 24, 2025 by DriesSchaumont
Nextflow needs to keep track of the Wave containers it puts in our ECR software/wave
#5801 opened Feb 18, 2025 by stevekm
3
Issue when running Azure batch + Fusion
#5794 opened Feb 14, 2025 by joaodemeirel
1
2
HTTPS link-based files, interpreted by a file() function can falsely make internal objects
#5792 opened Feb 14, 2025 by jfy133
2
Feature request: collectFile with newLine to use line endings found in the file(s) it is collecting lang/operators
#5790 opened Feb 13, 2025 by nh13
1
Is AWS Fargate configured to retry after spot interruption? executor/aws-batch
#5786 opened Feb 13, 2025 by Shians
topic channel output breaks storeDir lang/processes
#5785 opened Feb 12, 2025 by CormacKinsella
3
AWS Batch Fargate requires exact CPU values? executor/aws-batch
#5781 opened Feb 12, 2025 by Shians
4
SLURM SBATCH time setting wrong
#5775 opened Feb 10, 2025 by gevro
10
Problem with storeDir directive: "cp: '.command.out' and '.command.out' are the same file"
#5774 opened Feb 10, 2025 by Sxmple-DavidSchmidt
Unable to override container entrypoint in kubernetes with fusion and wave enabled executor/k8s storage/fusion
#5764 opened Feb 7, 2025 by oqadiSAK
join(remainder:true,by:[0,1]) operator (nf 24.10.4) returns a string instead of a tuple. lang/operators
#5737 opened Feb 3, 2025 by lindenb
Flux jobs that timeout are silently marked as completed
#5736 opened Jan 31, 2025 by epstein6
Documented description of keepHeader in collectFile doesn't match what happens lang/operators
#5734 opened Jan 31, 2025 by mahesh-panchal
Logic of keepHeader option of splitText is reversed. lang/operators
#5732 opened Jan 31, 2025 by mahesh-panchal
Fair sharing of azure batch resources executor/azure-batch
#5729 opened Jan 31, 2025 by fabien-nisol
env with non-existent host environment variable leads to warnings
#5722 opened Jan 28, 2025 by pinin4fjords
ProTip! Type g i on any issue or pull request to go back to the issue listing page.