clean some more bump version

nextgenusfs · Nov 4, 2024 · 0a3a741 · 0a3a741
1 parent 86296c4
commit 0a3a741
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Showing 7 changed files with 23 additions and 12 deletions.
diff --git a/buscolite/__init__.py b/buscolite/__init__.py
@@ -1 +1,3 @@
-from .__version__ import __version__
+import importlib.metadata
+
+__version__ = importlib.metadata.version("buscolite")
diff --git a/buscolite/__main__.py b/buscolite/__main__.py
@@ -4,7 +4,7 @@
 import os
 import argparse
 import json
-from .__version__ import __version__
+from .__init__ import __version__
 from .help_formatter import MyParser, MyHelpFormatter
 from .busco import runbusco
 from .utilities import summary_writer

diff --git a/buscolite/__version__.py b/buscolite/__version__.py
diff --git a/buscolite/busco.py b/buscolite/busco.py
@@ -1,11 +1,10 @@
-
 import os
 import tempfile
 import concurrent.futures
 from natsort import natsorted
 import pyhmmer
 import pyfastx
-from .__version__ import __version__
+from .__init__ import __version__
 from .log import startLogging
 from .search import (
     hmmer_search_single,
@@ -408,7 +407,13 @@ def runbusco(
         for b in CutOffs.keys():
             if b not in b_results:
                 missing.append(b)
-        stats = {"total": 0, "single-copy": 0, "fragmented": 0, "duplicated": 0, "missing": len(missing)}
+        stats = {
+            "total": 0,
+            "single-copy": 0,
+            "fragmented": 0,
+            "duplicated": 0,
+            "missing": len(missing),
+        }
         for k, v in natsorted(b_results.items()):
             stats["total"] += 1
             if (

diff --git a/buscolite/help_formatter.py b/buscolite/help_formatter.py
@@ -2,7 +2,7 @@
 import os
 import argparse
 import shutil
-from .__version__ import __version__
+from .__init__ import __version__
 import textwrap as _textwrap
 
 

diff --git a/buscolite/utilities.py b/buscolite/utilities.py
@@ -4,7 +4,7 @@
 import os
 import errno
 from natsort import natsorted
-from .__version__ import __version__
+from .__init__ import __version__
 
 
 def summary_writer(result, missing, cmd, cfg, handle, mode="genome"):
@@ -33,7 +33,14 @@ def summary_writer(result, missing, cmd, cfg, handle, mode="genome"):
             if v["status"] == "missing":
                 handle.write(
                     "{}\t{}\t{}\t{}\t{}\t{}\t{}\t{}\n".format(
-                        busco, v["status"], "", "", "", "", "", "", ""
+                        busco,
+                        v["status"],
+                        "",
+                        "",
+                        "",
+                        "",
+                        "",
+                        "",
                     )
                 )
             else:

diff --git a/pyproject.toml b/pyproject.toml
@@ -4,7 +4,7 @@ build-backend = "hatchling.build"
 
 [project]
 name = "buscolite"
-version = "24.7.29"
+version = "24.11.03"
 description = "busco analysis for gene predictions"
 readme = {file = "README.md", content-type = "text/markdown"}
 authors = [