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modify assertion 3
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Jon Palmer committed Nov 4, 2023
1 parent 1f407c8 commit 1059dee
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1 change: 1 addition & 0 deletions gapmm2/align.py
Original file line number Diff line number Diff line change
Expand Up @@ -307,6 +307,7 @@ def right_update_paf_minus(paf, align, slide, offset):
print(f"align={align}")
print(f"slide={slide}")
print(f"offset={offset}")
print(f"old_cs_tup={old_cs_tup}")
raise SystemExit(1)
new_cs = "cs:Z::{}~ct{}ac{}".format(
align["cigar"].strip("="), intron_len, new_cs_str
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