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24 Open 323 Closed
24 Open 323 Closed
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Issues list

Support for TreeSummarizedExperiment enhancement New feature or request
#802 opened Nov 20, 2024 by TuomasBorman
2
standardize the samplesheet for ampliseq to the other nf-core pipelines enhancement New feature or request
#790 opened Oct 29, 2024 by jenmuell
4 tasks
@jenmuell
2
Improving phylogenetic placement enhancement New feature or request
#787 opened Oct 28, 2024 by danilodileo
@erickdelgadillo @danilodileo
GSR-DB enhancement New feature or request
#779 opened Oct 3, 2024 by dbu008
1
Inconsistent taxonomic assignments with EPA-NG
#776 opened Sep 16, 2024 by VeronicRojo
@erikrikarddaniel
2
phred score mis-detection by dada2 bug Something isn't working
#773 opened Aug 22, 2024 by amakunin
9
Add MACSE to enable frame-shift detection for COI enhancement New feature or request
#758 opened Jul 2, 2024 by hjarnek
6
Adding ONT read support for ampliseq enhancement New feature or request
#741 opened May 13, 2024 by ShareiFae
2
Accessing 16S gene identifiers enhancement New feature or request
#734 opened Apr 12, 2024 by annotatebio
13
12S taxonomic classification databases enhancement New feature or request
#707 opened Feb 28, 2024 by emmastrand
3
Allow to analyse 454 sequencing data enhancement New feature or request
#669 opened Dec 1, 2023 by d4straub
2
Add blast-consensus support to Ampliseq
#663 opened Nov 28, 2023 by MatthewJM96
1
Adding the new Greengenes2 database for classification enhancement New feature or request
#658 opened Nov 9, 2023 by aimirza
19
A feature to remove taxa found in controls enhancement New feature or request
#634 opened Sep 5, 2023 by skose82
5
Add vsearch uchime_denovo for chimera removal (or flagging) enhancement New feature or request
#631 opened Aug 30, 2023 by andand
2
Add sintax support for all available databases enhancement New feature or request
#618 opened Aug 17, 2023 by jtangrot
1
Potential problem with demultiplexing and proposed solution enhancement New feature or request
#613 opened Aug 2, 2023 by a4000
1
Proposal: Seqkit stats when demultiplexing enhancement New feature or request
#611 opened Aug 2, 2023 by a4000
2
Proposal: Lowest Common Ancestor (LCA) module for assigning taxonomy enhancement New feature or request
#610 opened Aug 2, 2023 by a4000
2
Proposal: Blastn as an alternative classifier enhancement New feature or request
#608 opened Aug 2, 2023 by a4000
6
Phylogenetic placement part 2 enhancement New feature or request
#562 opened Mar 27, 2023 by erikrikarddaniel
Phylo placement part 1 enhancement New feature or request
#561 opened Mar 27, 2023 by erikrikarddaniel
Cut ASVs for taxonomy assignment enhancement New feature or request not urgent
#225 opened Feb 23, 2021 by erikrikarddaniel
5
Add demultiplexing step enhancement New feature or request
#64 opened Jan 18, 2019 by DiegoBrambilla
12
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