Merge pull request #506 from ctuni/master

added atoplex kit on genomes.config
nf-core · Aug 16, 2023 · 8eeb0ab · 8eeb0ab
2 parents 93d866a + 3198f4b
commit 8eeb0ab
Showing 1 changed file with 6 additions and 0 deletions.
diff --git a/conf/pipeline/viralrecon/genomes.config b/conf/pipeline/viralrecon/genomes.config
@@ -90,6 +90,12 @@ params {
             scheme     = 'nCoV-2019'
           }
         }
+        'atoplex' {
+            fasta      = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/MN908947.3/primer_schemes/artic/nCoV-2019/V1200/nCoV-2019.reference.fasta'
+            gff        = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/NC_045512.2/GCF_009858895.2_ASM985889v3_genomic.200409.gff.gz'
+            primer_bed = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/NC_045512.2/amplicon/nCoV-2019.atoplex.V1.bed'
+            scheme     = 'nCoV-2019'
+        }
       }
     }