fix: Set Genomics queue memory variable

nf-core · Nov 28, 2024 · a03e5a6 · a03e5a6
1 parent 01446f0
commit a03e5a6
Showing 1 changed file with 5 additions and 4 deletions.
diff --git a/conf/utd_ganymede.config b/conf/utd_ganymede.config
@@ -19,15 +19,16 @@ singularity {
 }
 
 def membership = "groups".execute().text
+def genomics_queue_memory = 28.GB
 
 def select_queue = { memory, cpu ->
-    if (memory <= 28.GB && cpu <= 16 && membership.contains('genomics')) {
+    if (memory <= genomics_queue_memory && cpu <= 16 && membership.contains('genomics')) {
         return 'genomics,normal'
     }
-    if (memory > 28.GB && memory <= 125.GB && cpu <= 12 && membership.contains('kim')) {
+    if (memory > genomics_queue_memory && memory <= 125.GB && cpu <= 12 && membership.contains('kim')) {
         return 'Kim,128s'
     }
-    if (memory > 28.GB && memory <= 125.GB && cpu <= 16) {
+    if (memory > genomics_queue_memory && memory <= 125.GB && cpu <= 16) {
         return '128s'
     }
     if (memory <= 250.GB && cpu <= 28) {
@@ -57,7 +58,7 @@ process {
 
     withLabel:process_medium {
         cpus   = { 16 * task.attempt }
-        memory = { 28.GB * task.attempt }
+        memory = { genomics_queue_memory * task.attempt }
     }
 }