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Update crg config #565

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merged 2 commits into from
Oct 6, 2023
Merged

Update crg config #565

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7d620eb
Update new CRG queue names
JoseEspinosa Oct 5, 2023
dd99876
Update contact person
JoseEspinosa Oct 5, 2023
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2 changes: 1 addition & 1 deletion conf/crg.config
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Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
//Profile config names for nf-core/configs
params {
config_profile_description = 'Centre for Genomic Regulation (CRG) cluster profile provided by nf-core/configs'
config_profile_contact = 'Athanasios Baltzis (@athbaltzis)'
config_profile_contact = 'Jose Espinosa-Carrasco (@joseespinosa)'
config_profile_url = 'http://www.linux.crg.es/index.php/Main_Page'
}

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10 changes: 5 additions & 5 deletions conf/pipeline/proteinfold/crg.config
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Original file line number Diff line number Diff line change
@@ -1,25 +1,25 @@
profiles {
crg {
params {
config_profile_contact = 'Athanasios Baltzis (@athbaltzis)'
config_profile_contact = 'Jose Espinosa-Carrasco (@joseespinosa)'
config_profile_description = 'nf-core/proteinfold CRG profile provided by nf-core/configs'
}
executor.name = 'crg'
process {
queue = 'short-sl7,long-sl7'
queue = 'short-centos79,long-centos79'
withName: 'ARIA2' {
time = '12h'
}
withName: 'RUN_ALPHAFOLD2|RUN_ALPHAFOLD2_PRED|RUN_ALPHAFOLD2_MSA' {
cpus = 1
memory = "30 GB"
queue = params.use_gpu ? 'gpu' : 'long-sl7'
queue = params.use_gpu ? 'gpu' : 'long-centos79'
clusterOptions = { ( task.queue == 'gpu' ? '-l gpu=1,virtual_free=30G' : '' ) }
}
withName: 'COLABFOLD_BATCH' {
cpus = 1
memory = "30 GB"
queue = params.use_gpu ? 'gpu' : 'long-sl7'
queue = params.use_gpu ? 'gpu' : 'long-centos79'
clusterOptions = { ( task.queue == 'gpu' ? '-l gpu=1,virtual_free=30G' : '' ) }
}
withName: 'MMSEQS_COLABFOLDSEARCH' {
Expand All @@ -31,7 +31,7 @@ profiles {
withName: 'RUN_ESMFOLD' {
cpus = 1
memory = "30 GB"
queue = params.use_gpu ? 'gpu' : 'long-sl7'
queue = params.use_gpu ? 'gpu' : 'long-centos79'
clusterOptions = { ( task.queue == 'gpu' ? '-l gpu=1,virtual_free=30G' : '' ) }
}
}
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