New config profile KAUST #809
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jfy133
approved these changes
Dec 1, 2024
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| // Keep work directory after a successful run | ||
| cleanup = false |
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Be wary of this, if users don't clean up their work directories manually and regularly, you may have very filled up hard drives very quickly
Nf-core pipelines come with a debug profile that can turn this off if necessary
| // Use existing images from the centralized library, if available | ||
| libraryDir = "/biocorelab/BIX/resources/singularity/images/" | ||
| // Download images that are missing from the library to user space | ||
| cacheDir = "/home/$USER/.singularity/nf_images/" |
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Please double check this works and nextflow doesn't try to resolve the variable [rather than bash] (this can happen in some of the config sections)
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And does the cache directory already exist for all users?
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name: New Config for KAUST
about: A new cluster config for KAUST Ibex cluster
Please follow these steps before submitting your PR:
[WIP]in its titlemasterbranchSteps for adding a new config profile:
conf/directorydocs/directorynfcore_custom.configfile in the top-level directoryREADME.mdfile in the top-level directoryprofile:scope in.github/workflows/main.yml.github/CODEOWNERS(**/<custom-profile>** @<github-username>)The purpose of this new config is to help users on the KAUST Ibex cluster to run nf-core workflows smoothly.
Thank you!