test: Update versions yaml snapshot

nf-core · Nov 26, 2024 · 17be23c · 17be23c
1 parent 3211da2
commit 17be23c
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Showing 6 changed files with 39 additions and 34 deletions.
diff --git a/modules/nf-core/spaceranger/count/tests/main.nf.test b/modules/nf-core/spaceranger/count/tests/main.nf.test
@@ -68,7 +68,7 @@ nextflow_process {
             assertAll(
                 { assert process.success },
                 { assert snapshot(
-                    process.out.versions,
+                    path(process.out.versions.get(0)).yaml,
                     process.out.outs.get(0).get(1).findAll { file(it).name !in [
                         'web_summary.html',
                         'scalefactors_json.json',
@@ -144,7 +144,7 @@ nextflow_process {
         then {
             assertAll(
                 { assert process.success },
-                { assert snapshot(process.out.versions).match() }
+                { assert snapshot(path(process.out.versions.get(0)).yaml).match() },
             )
         }
     }
@@ -204,7 +204,7 @@ nextflow_process {
             assertAll(
                 { assert process.success },
                 { assert snapshot(
-                    process.out.versions,
+                    path(process.out.versions.get(0)).yaml,
                     process.out.outs.get(0).get(1).findAll { file(it).name !in [
                         'web_summary.html',
                         'scalefactors_json.json',

diff --git a/modules/nf-core/spaceranger/count/tests/main.nf.test.snap b/modules/nf-core/spaceranger/count/tests/main.nf.test.snap
@@ -1,21 +1,25 @@
 {
     "spaceranger v1 (stub) - homo_sapiens - fasta - gtf - fastq - tif - csv": {
         "content": [
-            [
-                "versions.yml:md5,2e5b126bcf8345f790566e95e88f80f5"
-            ]
+            {
+                "SPACERANGER_COUNT": {
+                    "spaceranger": "3.1.2"
+                }
+            }
         ],
         "meta": {
             "nf-test": "0.9.2",
             "nextflow": "24.10.1"
         },
-        "timestamp": "2024-11-25T23:23:05.381760963"
+        "timestamp": "2024-11-26T01:48:31.348979531"
     },
     "spaceranger v2 - homo_sapiens - fasta - gtf - fastq - tif - csv": {
         "content": [
-            [
-                "versions.yml:md5,2e5b126bcf8345f790566e95e88f80f5"
-            ],
+            {
+                "SPACERANGER_COUNT": {
+                    "spaceranger": "3.1.2"
+                }
+            },
             [
                 "clusters.csv:md5,221a4554e62ea94b0df8dbf637d2c13c",
                 "clusters.csv:md5,53ee76645943b5562392aac51d2d9f3f",
@@ -62,13 +66,15 @@
             "nf-test": "0.9.2",
             "nextflow": "24.10.1"
         },
-        "timestamp": "2024-11-25T22:11:25.466250328"
+        "timestamp": "2024-11-26T01:58:16.555517048"
     },
     "spaceranger v1 - homo_sapiens - fasta - gtf - fastq - tif - csv": {
         "content": [
-            [
-                "versions.yml:md5,2e5b126bcf8345f790566e95e88f80f5"
-            ],
+            {
+                "SPACERANGER_COUNT": {
+                    "spaceranger": "3.1.2"
+                }
+            },
             [
                 "filtered_feature_bc_matrix.h5:md5,a756f6dda550f52f9fb3e347207a2c6c",
                 "metrics_summary.csv:md5,38774fc5f54873d711b4898a2dd50e72",
@@ -85,6 +91,6 @@
             "nf-test": "0.9.2",
             "nextflow": "24.10.1"
         },
-        "timestamp": "2024-11-25T22:00:53.207473113"
+        "timestamp": "2024-11-26T01:48:13.569651476"
     }
 }
diff --git a/modules/nf-core/spaceranger/mkgtf/tests/main.nf.test b/modules/nf-core/spaceranger/mkgtf/tests/main.nf.test
@@ -24,7 +24,10 @@ nextflow_process {
         then {
             assertAll(
                 { assert process.success },
-                { assert snapshot(process.out).match() }
+                { assert snapshot(
+                    process.out.gtf,
+                    path(process.out.versions.get(0)).yaml,
+                ).match() }
             )
         }
 

diff --git a/modules/nf-core/spaceranger/mkgtf/tests/main.nf.test.snap b/modules/nf-core/spaceranger/mkgtf/tests/main.nf.test.snap
@@ -1,25 +1,19 @@
 {
     "homo_sapiens - gtf": {
         "content": [
+            [
+                "genome.filtered.gtf:md5,50fc877b1c53b36b3b413aff88bda48c"
+            ],
             {
-                "0": [
-                    "genome.filtered.gtf:md5,50fc877b1c53b36b3b413aff88bda48c"
-                ],
-                "1": [
-                    "versions.yml:md5,33fb50e717957f761c5105f641777f81"
-                ],
-                "gtf": [
-                    "genome.filtered.gtf:md5,50fc877b1c53b36b3b413aff88bda48c"
-                ],
-                "versions": [
-                    "versions.yml:md5,33fb50e717957f761c5105f641777f81"
-                ]
+                "SPACERANGER_MKGTF": {
+                    "spaceranger": "3.1.2"
+                }
             }
         ],
         "meta": {
             "nf-test": "0.9.2",
             "nextflow": "24.10.1"
         },
-        "timestamp": "2024-11-25T22:11:40.541776579"
+        "timestamp": "2024-11-26T01:58:29.469616437"
     }
 }
diff --git a/modules/nf-core/spaceranger/mkref/tests/main.nf.test b/modules/nf-core/spaceranger/mkref/tests/main.nf.test
@@ -25,7 +25,7 @@ nextflow_process {
             assertAll(
                 { assert process.success },
                 { assert snapshot(
-                    process.out.versions,
+                    path(process.out.versions.get(0)).yaml,
                     "${process.out.reference[0]}/fasta",
                     "${process.out.reference[0]}/genes",
                     "${process.out.reference[0]}/reference.json",

diff --git a/modules/nf-core/spaceranger/mkref/tests/main.nf.test.snap b/modules/nf-core/spaceranger/mkref/tests/main.nf.test.snap
@@ -1,9 +1,11 @@
 {
     "homo_sapiens - fasta - gtf": {
         "content": [
-            [
-                "versions.yml:md5,b4133656390d1c5049fcab5ef228a145"
-            ],
+            {
+                "SPACERANGER_MKREF": {
+                    "spaceranger": "3.1.2"
+                }
+            },
             [
                 "genome.fa:md5,f315020d899597c1b57e5fe9f60f4c3e",
                 "genome.fa.fai:md5,3520cd30e1b100e55f578db9c855f685"
@@ -33,6 +35,6 @@
             "nf-test": "0.9.2",
             "nextflow": "24.10.1"
         },
-        "timestamp": "2024-11-25T22:12:02.001945821"
+        "timestamp": "2024-11-26T01:58:49.663386635"
     }
 }