Set PYTHONHASHSEED for umitools dedup #1932
Merged
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The umi_tools dedup command is not currently deterministic, even if
--random-seed
is set, unless thePYTHONHASHSEED
environment variable is also set. Detailed in CGATOxford/UMI-tools#440 and https://github.com/CGATOxford/UMI-tools/pull/470. Not fixed in the main umitools, so just explicitly export the environment variable here.versions.yml
file.label
PROFILE=docker pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware
PROFILE=singularity pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware
PROFILE=conda pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware