Initial release of nf-core/pgdb, created with the nf-core template.
Added
The initial version of the pipeline features the following steps:
- (optional) ENSEMBL Reference proteomes included in final proteome
- Convert a Variant genome database like COSMIC or CBioPortal to proteomes
- Convert provided VCF to proteome database
- (optional) Generate the decoy database and attach it to the final proteome
Known issues
If you experience nextflow running forever after a failed step, try setting errorStrategy = terminate. See the corresponding nextflow issue.