Add rosettafold2na

[abotlp]

PR checklist

• This comment contains a description of changes (with reason).
• If you've fixed a bug or added code that should be tested, add tests!
• If you've added a new tool - have you followed the pipeline conventions in the contribution docs
• If necessary, also make a PR on the nf-core/proteinfold branch on the nf-core/test-datasets repository.
• Make sure your code lints (nf-core lint).
• Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
• Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
• Usage Documentation in docs/usage.md is updated.
• Output Documentation in docs/output.md is updated.
• CHANGELOG.md is updated.
• README.md is updated (including new tool citations and authors/contributors).

Changes

• Added RoseTTAFold2NA as a new module
• Updated nextflow.config to include RF2NA-specific parameters
• Added RF2NA database links and paths in conf/dbs.config
• Created conf/modules_rosettafold2na.config for RF2NA-specific module configurations
• Added test configuration for RF2NA (conf/test_rosettafold2na.config)
• Updated Dockerfile and Singularity definition file to include RF2NA
• Updated input schema to accommodate RF2NA requirements
• Updated MultiQC report generation to include RF2NA results
• Updated documentation (README.md, usage.md, output.md) to include RF2NA information
• Added CI workflow for RF2NA testing

[nf-core-bot]

Warning

Newer version of the nf-core template is available.

Your pipeline is using an old version of the nf-core template: 3.1.1.
Please update your pipeline to the latest version.

For more documentation on how to update your pipeline, please see the nf-core documentation and Synchronisation documentation.