Turn off filtered gtf publishing and add tower.yml

nf-core · Oct 3, 2022 · 10ab4d2 · 10ab4d2
1 parent d55ffd5
commit 10ab4d2
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Showing 2 changed files with 19 additions and 0 deletions.
diff --git a/conf/modules.config b/conf/modules.config
@@ -37,6 +37,14 @@ process {
             mode: params.publish_dir_mode
         ]
     }
+    withName: 'GTF_GENE_FILTER' {
+        publishDir = [
+            path: { "${params.outdir}/gtf_filter" },
+            mode: params.publish_dir_mode,
+            saveAs: { filename -> filename.equals('versions.yml') ? null : filename },
+            enabled: false
+        ]
+    }
 }
 
 if(params.aligner == "cellranger") {

diff --git a/tower.yml b/tower.yml
@@ -0,0 +1,11 @@
+reports:
+  multiqc_report.html:
+    display: "MultiQC HTML report"
+  "**/fastqc/*_fastqc.html":
+    display: "FastQC HTML report"
+  "**/pipeline_info/execution_timeline_*.html":
+    display: "Execution timeline report"
+  "**/pipeline_info/execution_report_*.html":
+    display: "Execution overview report"
+  "**/star/**/*.Log.final.out":
+    display: "Star per-sample report"