nf-core CI

Merge pull request #67 from nf-core/use-spatialdata #225

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Triggered via push April 12, 2024 12:29

fasterius

dev

Status Failure

Total duration 12m 15s

Artifacts –

ci.yml

on: push

Choose nextflow versions to test against depending on target branch

Matrix: Run pipeline with test data

Annotations

4 errors and 6 warnings

Run pipeline with test data (23.04.0, tests/pipeline/test_spaceranger_ffpe_v1.nf.test)

Process completed with exit code 1.

Run pipeline with test data (23.04.0, tests/pipeline/test_spaceranger_ffpe_v1.nf.test)

Process completed with exit code 1.

Run pipeline with test data (latest-everything, tests/pipeline/test_spaceranger_ffpe_v1.nf.test)

Process completed with exit code 1.

Run pipeline with test data (latest-everything, tests/pipeline/test_spaceranger_ffpe_v1.nf.test)

Process completed with exit code 1.

Run pipeline with test data (23.04.0, tests/pipeline/test_downstream.nf.test)

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Run pipeline with test data (latest-everything, tests/pipeline/test_downstream.nf.test)

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Run pipeline with test data (23.04.0, tests/pipeline/test_spaceranger_ffpe_v1.nf.test)

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Run pipeline with test data (latest-everything, tests/pipeline/test_spaceranger_ffpe_v1.nf.test)

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Run pipeline with test data (23.04.0, tests/pipeline/test_spaceranger_ffpe_v2_cytassist.nf.test)

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Run pipeline with test data (latest-everything, tests/pipeline/test_spaceranger_ffpe_v2_cytassist...

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.