Fix environment issues with conda

nf-core · Oct 25, 2024 · 2f5bc32 · 2f5bc32
1 parent cc9995f
commit 2f5bc32
Showing 1 changed file with 4 additions and 4 deletions.
diff --git a/env/environment.yml b/env/environment.yml
@@ -11,11 +11,11 @@ dependencies:
   - papermill=2.3.4
   - pip=23.0.1
   - python=3.10
-  - harmonypy==0.0.10
-  - scanorama==1.7.4
-  - scanpy==1.10.0
-  - squidpy==1.4.1
   - pip:
+      - harmonypy==0.0.10
+      - scanorama==1.7.4
+      - scanpy==1.10.0
+      - squidpy==1.4.1
       - scipy==1.12.0
       - spatialdata-io==0.1.5
       - spatialdata-plot==0.2.6