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Issues: nf-core/test-datasets

Modules test-data task force master list
#1243 opened Jul 2, 2024 by SPPearce
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Issues list

Test data for xenium pipeline - spatialxe
#1345 opened Oct 11, 2024 by khersameesh24
@khersameesh24
aws s3 links
#1252 opened Jul 2, 2024 by SPPearce
Is there a better way to provide test-data for modules than we currently have, with the two stage process.
#1251 opened Jul 2, 2024 by SPPearce
1
If we are not allowing links to external git files, then we need to deal with all those files
#1250 opened Jul 2, 2024 by SPPearce
1
Very carefully delete any branches that are unnecessary (especially ones that have already been merged)
#1249 opened Jul 2, 2024 by SPPearce
3
Generate a page on the website to be able to view the current test data
#1248 opened Jul 2, 2024 by SPPearce
Organise and document the files that we currently have better, rather than one massive README with single lines of text.
#1247 opened Jul 2, 2024 by SPPearce
Determine what we want to do with tools with very specific test data files
#1246 opened Jul 2, 2024 by SPPearce
Rearrange and rename the delete_me folder
#1245 opened Jul 2, 2024 by SPPearce
2
Set up a GitHub bot to automatically post links to new PRs into the #request-review or #test-datasets slack channels.
#1244 opened Jul 2, 2024 by SPPearce
Modules test-data task force master list
#1243 opened Jul 2, 2024 by SPPearce
Need testdata for mcmicro-celesta
#1131 opened Mar 19, 2024 by LukasHats
Test data required for testing scimap/spatiallda module imaging
#1130 opened Mar 19, 2024 by chiarasch
@migueLib @chiarasch
CAT - Contig Annotation Tool custom database
#1102 opened Feb 16, 2024 by maxibor
1
Request to add ONT-Amplicon seq for SARS-CoV-2:Wastewater
#1087 opened Feb 7, 2024 by arunbodd
@arunbodd
What should we do with docs/ADD_NEW_DATA.md and docs/USE_EXISTING_DATA.md on pipeline branches?
#1069 opened Jan 17, 2024 by Aratz
Add new test data for modkit_pileup
#1050 opened Nov 29, 2023 by Michal-Babins
Homo sapiens Genome.gtf test-dataset is invalid
#1028 opened Oct 21, 2023 by JackCurragh
add a new dataset for est-sfs
#1019 opened Oct 17, 2023 by BioInf2305
@BioInf2305
[taxprofiler branch] Add new taxprofiler sourmash db
#1018 opened Oct 16, 2023 by vmikk
@vmikk
Use version tags on branches
#993 opened Aug 23, 2023 by edmundmiller
1
Use git-lfs
#992 opened Aug 18, 2023 by edmundmiller
Pipedreams
#991 opened Aug 18, 2023 by edmundmiller
4 tasks
Add new test data for sammyseq
#832 opened Mar 29, 2023 by daisymut
7 of 9 tasks
1
@daisymut
Add cyano nucleotide taxonomy to phyloplace test data
#814 opened Mar 27, 2023 by erikrikarddaniel
@erikrikarddaniel
ProTip! What’s not been updated in a month: updated:<2024-11-02.