Merge pull request #480 from nf-osi/add-dsp-assay

Add assay

NF.jsonld

@@ -27195,6 +27195,9 @@
                 {
                     "@id": "bts:Actigraphy"
                 },
+                {
+                    "@id": "bts:AlgometRxNociometer"
+                },
                 {
                     "@id": "bts:ATAC-seq"
                 },
@@ -27829,6 +27832,26 @@
             "sms:required": "sms:false",
             "sms:validationRules": []
         },
+        {
+            "@id": "bts:AlgometRxNociometer",
+            "@type": "rdfs:Class",
+            "rdfs:comment": "TBD",
+            "rdfs:label": "AlgometRxNociometer",
+            "rdfs:subClassOf": [
+                {
+                    "@id": "bts:ProtocolAssay"
+                },
+                {
+                    "@id": "bts:Assay"
+                }
+            ],
+            "schema:isPartOf": {
+                "@id": "http://schema.biothings.io"
+            },
+            "sms:displayName": "AlgometRx Nociometer",
+            "sms:required": "sms:false",
+            "sms:validationRules": []
+        },
         {
             "@id": "bts:ATAC-seq",
             "@type": "rdfs:Class",
@@ -31061,6 +31084,9 @@
                 {
                     "@id": "bts:Actigraphy"
                 },
+                {
+                    "@id": "bts:AlgometRxNociometer"
+                },
                 {
                     "@id": "bts:ATAC-seq"
                 },

modules/Assay/Assay.yaml

@@ -22,6 +22,9 @@ enums:
       actigraphy:
         description: Use of a portable device (actigraph) to study sleep-wake patterns and circadian rhythms by assessing movement.
         meaning: http://purl.obolibrary.org/obo/MAXO_0000914
+      AlgometRx Nociometer:
+        description: Assay that can selectively measure the sensitivity of three different nerve fiber types. 
+          An overall score can be derived to indicate the type of pain a person is experiencing and can be used to monitor how well a patient responds to treatment of pain.
       ATAC-seq:
         description: Open chromatin regions measured by sequencing DNA after assay for transposase-accessible chromatin (ATAC) treatment
         meaning: http://purl.obolibrary.org/obo/OBI_0002039
@@ -420,7 +423,8 @@ enums:
         meaning: http://purl.obolibrary.org/obo/NCIT_C20828
         source: https://en.wikipedia.org/wiki/Optical_coherence_tomography
       optokinetic reflex assay:
-        description: The optokinetic reflex (OKR), which serves to stabilize a moving image on the retina, is a behavioral response that has many favorable attributes as a test of CNS function. The OKR requires no training, assesses the function of diverse CNS circuits, can be induced repeatedly with minimal fatigue or adaptation, and produces an electronic record that is readily and objectively quantifiable.
+        description: The optokinetic reflex (OKR), which serves to stabilize a moving image on the retina, is a behavioral response that has many favorable attributes as a test of CNS function.
+          The OKR requires no training, assesses the function of diverse CNS circuits, can be induced repeatedly with minimal fatigue or adaptation, and produces an electronic record that is readily and objectively quantifiable.
         meaning: https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0002055
       oscillatory rheology:
         description: Oscillatory rheology is a standard experimental tool for studying viscosity.
@@ -432,7 +436,8 @@ enums:
         description: Assay measuring oxygen consumption rate (OCR) to assess changes in metabolism in e.g. cancer cells
         meaning: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8275291/
       pattern electroretinogram:
-        description: Pattern electroretinogram (PERG) is an electrophysiologic ophthalmologic test that provides non-invasive objective, quantitative measurement of central retinal function. PERG is the retinal response to a pattern-reversing, black-and-white checkerboard or stripped stimulus. The PERG assesses both macular and retinal ganglion cell electrical activity and can help differentiate between diseases of macular versus optic nerve dysfunction.
+        description: Pattern electroretinogram (PERG) is an electrophysiologic ophthalmologic test that provides non-invasive objective, quantitative measurement of central retinal function.
+          PERG is the retinal response to a pattern-reversing, black-and-white checkerboard or stripped stimulus. The PERG assesses both macular and retinal ganglion cell electrical activity and can help differentiate between diseases of macular versus optic nerve dysfunction.
         meaning: https://www.ncbi.nlm.nih.gov/books/NBK560641
       perineurial cell thickness:
         description: Measuring the thickness of the cells in the perineurium, e.g. in developing Drosophila melanogaster.

registered-json-schemas/Dataset.json

@@ -12,6 +12,7 @@
         "3D microtissue viability",
         "actigraphy",
         "active avoidance learning behavior assay",
+        "AlgometRx Nociometer",
         "array",
         "ATAC-seq",
         "atomic force microscopy",

registered-json-schemas/PortalDataset.json

@@ -23,6 +23,7 @@
           "3D imaging",
           "3D microtissue viability",
           "actigraphy",
+          "AlgometRx Nociometer",
           "ATAC-seq",
           "ATPase activity assay",
           "BrdU proliferation assay",

registered-json-schemas/Superdataset.json

@@ -12,6 +12,7 @@
         "3D microtissue viability",
         "actigraphy",
         "active avoidance learning behavior assay",
+        "AlgometRx Nociometer",
         "array",
         "ATAC-seq",
         "atomic force microscopy",