Feat/json schema workflow

[anngvu]

This implements needed changes described in #398.
Previously schemas were re-registered manually after updates, but it would be better to build it into the workflow.

So this has two parts:

First, when something like modules/Assay changes, the JSON schemas need to be rebuilt, similar to how NF.jsonld is rebuilt. NF.jsonld format "targets" the DCA application, while json format "targets" the Synapse platform.

You can see this in how files changed not only includes just .jsonld but also the .jsons now.

If changes are merged, JSON schema needs to be re-registered with Synapse registry.

This should mostly work -- it is in the propagate.yaml workflow. It is just sending a request to the Synapse server with the new schemas.

Update: adding @cconrad8 mainly for awareness bc asked about this last sprint.

[github-actions]

Test Suite Report

Template Generation

template	result	link
AnimalIndividualTemplate	😄	template link
BiospecimenTemplate	😄	template link
ClinicalAssayTemplate	😄	template link
EpigeneticsAssayTemplate	😄	template link
FlowCytometryTemplate	😄	template link
GenomicsAssayTemplate	😄	template link
GenomicsAssayTemplateExtended	😄	template link
HumanCohortTemplate	😄	template link
ImagingAssayTemplate	😄	template link
LightScatteringAssayTemplate	😄	template link
MRIAssayTemplate	😄	template link
PharmacokineticsAssayTemplate	😄	template link
PlateBasedReporterAssayTemplate	😄	template link
ProcessedAlignedReadsTemplate	😄	template link
ProcessedExpressionTemplate	😄	template link
ProcessedVariantCallsTemplate	😄	template link
ProteomicsAssayTemplate	😄	template link
ProtocolTemplate	😄	template link
RNASeqTemplate	😄	template link
ScRNASeqTemplate	😄	template link
UpdateMilestoneReport	😄	template link
WESTemplate	😄	template link
WGSTemplate	😄	template link

Manifest Validation

manifest	result	expectation
GenomicsAssayTemplate_0.csv	😄	Lists can be blank if attr not required using ‘list like’ rule
GenomicsAssayTemplate_1.csv	😄	Mixing blanks and regular list values works
GenomicsAssayTemplate_2.csv	😄	Conditional validation for attributes is currently not supported
ScRNASeqTemplate_0.csv	😄	Single list val works by using ‘list like’ rule
ScRNASeqTemplate_1.csv	😄	Fail because of missing data in required field libraryStrand

[cconrad8]

Thanks! I will comment on the issue with just one follow-up to help me understand but unrelated to the PR