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Update Assay.yaml #536

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merged 2 commits into from
Oct 28, 2024
Merged

Update Assay.yaml #536

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0d4943c
Update Assay.yaml
anngvu Oct 28, 2024
4ba9c62
Rebuild NF.jsonld, json
nfosi-service Oct 28, 2024
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52 changes: 52 additions & 0 deletions NF.jsonld
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Original file line number Diff line number Diff line change
Expand Up @@ -27773,6 +27773,9 @@
{
"@id": "bts:Proximityextensionassay"
},
{
"@id": "bts:Puretoneaverage"
},
{
"@id": "bts:QuantitativePCR"
},
Expand Down Expand Up @@ -27863,6 +27866,9 @@
{
"@id": "bts:Whole-cellpatchclamp"
},
{
"@id": "bts:Wordrecognitionscore"
},
{
"@id": "bts:STRprofile"
}
Expand Down Expand Up @@ -30851,6 +30857,26 @@
"sms:required": "sms:false",
"sms:validationRules": []
},
{
"@id": "bts:Puretoneaverage",
"@type": "rdfs:Class",
"rdfs:comment": "TBD",
"rdfs:label": "Puretoneaverage",
"rdfs:subClassOf": [
{
"@id": "bts:ProtocolAssay"
},
{
"@id": "bts:Assay"
}
],
"schema:isPartOf": {
"@id": "http://schema.biothings.io"
},
"sms:displayName": "pure tone average",
"sms:required": "sms:false",
"sms:validationRules": []
},
{
"@id": "bts:QuantitativePCR",
"@type": "rdfs:Class",
Expand Down Expand Up @@ -31434,6 +31460,26 @@
"sms:required": "sms:false",
"sms:validationRules": []
},
{
"@id": "bts:Wordrecognitionscore",
"@type": "rdfs:Class",
"rdfs:comment": "TBD",
"rdfs:label": "Wordrecognitionscore",
"rdfs:subClassOf": [
{
"@id": "bts:ProtocolAssay"
},
{
"@id": "bts:Assay"
}
],
"schema:isPartOf": {
"@id": "http://schema.biothings.io"
},
"sms:displayName": "word recognition score",
"sms:required": "sms:false",
"sms:validationRules": []
},
{
"@id": "bts:STRprofile",
"@type": "rdfs:Class",
Expand Down Expand Up @@ -31961,6 +32007,9 @@
{
"@id": "bts:Proximityextensionassay"
},
{
"@id": "bts:Puretoneaverage"
},
{
"@id": "bts:QuantitativePCR"
},
Expand Down Expand Up @@ -32051,6 +32100,9 @@
{
"@id": "bts:Whole-cellpatchclamp"
},
{
"@id": "bts:Wordrecognitionscore"
},
{
"@id": "bts:STRprofile"
}
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4 changes: 4 additions & 0 deletions modules/Assay/Assay.yaml
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Expand Up @@ -503,6 +503,8 @@ enums:
proximity extension assay:
description: Olink's Proximity Extension Assay (PEA) combines specificity and scalability to enable high-throughput, multiplex protein biomarker analysis.
source: https://olink.com/technology/what-is-pea
pure tone average:
description: Metric used to summarize hearing sensitivity at specific frequencies to assess hearing impairment. As PTA increases, hearing ability decreases.
quantitative PCR:
description: Quantitative PCR (Q-PCR) is used to measure the quantity of a PCR product (commonly in real-time). It quantitatively measures starting amounts of DNA, cDNA, or RNA.
meaning: http://purl.obolibrary.org/obo/MI_1195
Expand Down Expand Up @@ -597,6 +599,8 @@ enums:
whole-cell patch clamp:
description: A patch-clamp assay where the electrode is left in place on the cell, as in cell-attached recordings, but the membrane patch has been perforated, providing access from the interior of the pipette to the intracellular space of the cell. Measurements made with this technique involve recording currents through multiple channels simultaneously, over the membrane of the entire cell.
meaning: http://purl.obolibrary.org/obo/OBI_0002178
word recognition score:
description: Assays how well a person can understand speech by repeating a list of words. The WRS is a percentage of words correctly repeated. It's a more functional measure because it predicts whether hearing loss can be improved with amplification.
STR profile:
description: The analysis of all of the short tandem repeats in the genome of a biological sample.
meaning: http://purl.obolibrary.org/obo/NCIT_C129889
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2 changes: 2 additions & 0 deletions registered-json-schemas/PortalDataset.json
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Expand Up @@ -170,6 +170,7 @@
"positron emission tomography",
"PROMIS Cognitive Function",
"proximity extension assay",
"pure tone average",
"quantitative PCR",
"questionnaire",
"reactive oxygen species assay",
Expand Down Expand Up @@ -200,6 +201,7 @@
"whole exome sequencing",
"whole genome sequencing",
"whole-cell patch clamp",
"word recognition score",
"STR profile"
],
"title": "assay",
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2 changes: 2 additions & 0 deletions registered-json-schemas/Superdataset.json
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Expand Up @@ -170,6 +170,7 @@
"positron emission tomography",
"PROMIS Cognitive Function",
"proximity extension assay",
"pure tone average",
"quantitative PCR",
"questionnaire",
"reactive oxygen species assay",
Expand Down Expand Up @@ -200,6 +201,7 @@
"whole exome sequencing",
"whole genome sequencing",
"whole-cell patch clamp",
"word recognition score",
"STR profile"
],
"title": "assay",
Expand Down
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