fix bad find and replaces #65

	name: schematic-schema-convert

	on:
	push:
	branches:
	- '**' # matches every branch
	- '!main' # excludes main
	paths:
	- 'nf_research_tools.rdb.model.csv'

	workflow_dispatch:

	env:
	schema_filename: nf_research_tools.rdb.model.csv

	jobs:
	build:
	runs-on: ubuntu-22.04

	steps:
	- name: Install System Dependencies
	run: \|
	sudo apt-get update
	sudo apt-get install -y pip python3.10-venv libcurl4-openssl-dev

	- uses: actions/checkout@v3
	with:
	ref: ${{ github.event.pull_request.head.ref }}
	persist-credentials: false # otherwise, the token used is the GITHUB_TOKEN, instead of your personal access token.
	fetch-depth: 0 # otherwise, there would be errors pushing refs to the destination repository

	- name: Install schematic and convert schema #temporarily revert to this to use edge version of schematic
	shell: bash
	run: \|
	pip install git+https://github.com/Sage-Bionetworks/schematic.git@74d3b98f97eb14f70e9f6ad3a02005812b237329
	schematic schema convert $schema_filename -o nf-research-tools.jsonld


	- name: Commit files
	run: \|
	git config --local user.email "[email protected]"
	git config --local user.name "nf-osi[bot]"
	git commit -m "Add changes" -a

	- name: Push changes
	uses: ad-m/github-push-action@master
	with:
	github_token: ${{ secrets.GITHUB_TOKEN }}
	branch: ${{ github.ref }}

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