Update nf_research_tools.rdb.model.csv #68
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name: schematic-schema-convert | |
on: | |
push: | |
branches: | |
- '**' # matches every branch | |
- '!main' # excludes main | |
paths: | |
- 'nf_research_tools.rdb.model.csv' | |
workflow_dispatch: | |
env: | |
schema_filename: nf_research_tools.rdb.model.csv | |
jobs: | |
build: | |
runs-on: ubuntu-22.04 | |
steps: | |
- name: Install System Dependencies | |
run: | | |
sudo apt-get update | |
sudo apt-get install -y pip python3.10-venv libcurl4-openssl-dev | |
- uses: actions/checkout@v3 | |
with: | |
ref: ${{ github.event.pull_request.head.ref }} | |
persist-credentials: false # otherwise, the token used is the GITHUB_TOKEN, instead of your personal access token. | |
fetch-depth: 0 # otherwise, there would be errors pushing refs to the destination repository | |
- name: Install schematic and convert schema #temporarily revert to this to use edge version of schematic | |
shell: bash | |
run: | | |
pip install git+https://github.com/Sage-Bionetworks/schematic.git@74d3b98f97eb14f70e9f6ad3a02005812b237329 | |
schematic schema convert $schema_filename -o nf-research-tools.jsonld | |
- name: Commit files | |
run: | | |
git config --local user.email "[email protected]" | |
git config --local user.name "nf-osi[bot]" | |
git commit -m "Add changes" -a | |
- name: Push changes | |
uses: ad-m/github-push-action@master | |
with: | |
github_token: ${{ secrets.GITHUB_TOKEN }} | |
branch: ${{ github.ref }} |