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Merge pull request #69 from nf-osi/additional-models
Additional models
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NF-Tools-Schemas/animal-model/SubmitAnimalModelUiSchema.json
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|---|---|---|
| @@ -0,0 +1,31 @@ | ||
| { | ||
| "description": { | ||
| "ui:widget": "textarea", | ||
| "ui:placeholder": "Provide a brief description (~20 words)", | ||
| "ui:options": { | ||
| "rows": 3 | ||
| } | ||
| }, | ||
| "basicInfo": { | ||
| "species": { | ||
| "ui:widget": "radio", | ||
| "ui:inline": "true" | ||
| } | ||
| }, | ||
| "animalModelDisease": { | ||
| "ui:widget": "radio", | ||
| "ui:inline": "true" | ||
| }, | ||
| "animalModelManifestation": { | ||
| "ui:widget": "radio" | ||
| }, | ||
| "alleleType": { | ||
| "ui:widget": "radio" | ||
| }, | ||
| "mutationTypes": { | ||
| "ui:widget": "select" | ||
| }, | ||
| "itemAcquisition": { | ||
| "ui:widget": "radio" | ||
| } | ||
| } |
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|---|---|---|
| @@ -0,0 +1,331 @@ | ||
| { | ||
| "$schema": "http://json-schema.org/draft-07/schema#", | ||
| "title": "Submit Animal Model", | ||
| "type": "object", | ||
| "properties": { | ||
| "userInfo": { | ||
| "type": "object", | ||
| "title": "Your Information", | ||
| "properties": { | ||
| "firstandlastName": { | ||
| "type": "string", | ||
| "title": "First and Last Name" | ||
| }, | ||
| "email": { | ||
| "type": "string", | ||
| "title": "Contact Email", | ||
| "format": "email" | ||
| }, | ||
| "institution": { | ||
| "type": "string", | ||
| "title": "Institution/Affiliation", | ||
| "default": "" | ||
| }, | ||
| "isDeveloper": { | ||
| "type": "string", | ||
| "title": "Are you the developer?", | ||
| "enum": [ | ||
| "Yes", | ||
| "No" | ||
| ], | ||
| "default": "Yes" | ||
| } | ||
| } | ||
| }, | ||
| "basicInfo": { | ||
| "type": "object", | ||
| "title": "", | ||
| "properties": { | ||
| "animalModelName": { | ||
| "type": "string", | ||
| "title": "Name of Animal Model" | ||
| }, | ||
| "synonyms": { | ||
| "type": "string", | ||
| "title": "Synonyms" | ||
| }, | ||
| "description": { | ||
| "type": "string", | ||
| "title": "Description (~20 words)" | ||
| }, | ||
| "species": { | ||
| "type": "string", | ||
| "title": "Species", | ||
| "enum": [ | ||
| "Mouse", | ||
| "Rat", | ||
| "Pig", | ||
| "Zebrafish", | ||
| "Fruit Fly", | ||
| "Other" | ||
| ] | ||
| } | ||
| } | ||
| }, | ||
| "backgroundStrain": { | ||
| "type": "string", | ||
| "title": "Background Strain", | ||
| "examples": [ | ||
| "C57BL/6" | ||
| ] | ||
| }, | ||
| "backgroundSubstrain": { | ||
| "type": "string", | ||
| "title": "Background Substrain", | ||
| "examples": [ | ||
| "C57BL/6J" | ||
| ] | ||
| }, | ||
| "strainNomenclature": { | ||
| "type": "string", | ||
| "title": "Strain Nomenclature" | ||
| }, | ||
| "animalModelDisease": { | ||
| "type": "string", | ||
| "title": "Disease", | ||
| "enum": [ | ||
| "Neurofibromatosis type 1", | ||
| "Neurofibromatosis type 2", | ||
| "No known disease", | ||
| "Schwannomatosis" | ||
| ] | ||
| }, | ||
| "animalModelManifestation": { | ||
| "type": "string", | ||
| "title": "Manifestation", | ||
| "enum": [ | ||
| "No Symptoms", | ||
| "Acute Myeloid Leukemia", | ||
| "Astrocytoma", | ||
| "Cognition", | ||
| "Growth", | ||
| "Heart Malformation", | ||
| "High Grade Glioma", | ||
| "Malignant Peripheral Nerve Sheath Tumor", | ||
| "Metabolic Function", | ||
| "Neural Crest Hyperplasia", | ||
| "Optic Nerve Glioma", | ||
| "Plexiform Neurofibroma", | ||
| "Spinal Development", | ||
| "Other" | ||
| ] | ||
| }, | ||
| "alleleType": { | ||
| "type": "string", | ||
| "title": "Allele Type", | ||
| "enum": [ | ||
| "Conditional ready", | ||
| "Constitutively active", | ||
| "Dominant negative", | ||
| "Humanized sequence", | ||
| "Hypomorph", | ||
| "Inducible", | ||
| "Inserted expressed sequence", | ||
| "Knockdown", | ||
| "Modified isoform(s)", | ||
| "No functional change", | ||
| "Null/knockout", | ||
| "RMCE-Ready", | ||
| "Recombinase", | ||
| "Reporter", | ||
| "Transactivator", | ||
| "Transposase", | ||
| "Transposon concatemer", | ||
| "Other" | ||
| ] | ||
| }, | ||
| "affectedGeneSymbol": { | ||
| "type": "string", | ||
| "title": "Affected Gene Symbol" | ||
| }, | ||
| "mutationTypes": { | ||
| "type": "object", | ||
| "title": "Mutation Types", | ||
| "properties": { | ||
| "Disruption caused by insertion of vector": { | ||
| "type": "boolean" | ||
| }, | ||
| "Duplication": { | ||
| "type": "boolean" | ||
| }, | ||
| "Insertion": { | ||
| "type": "boolean" | ||
| }, | ||
| "Insertion of gene trap vector": { | ||
| "type": "boolean" | ||
| }, | ||
| "Intergenic deletion": { | ||
| "type": "boolean" | ||
| }, | ||
| "Intragenic deletion": { | ||
| "type": "boolean" | ||
| }, | ||
| "Inversion": { | ||
| "type": "boolean" | ||
| }, | ||
| "Loss of heterozygosity (unspecified mechanism)": { | ||
| "type": "boolean" | ||
| }, | ||
| "Nucleotide repeat expansion": { | ||
| "type": "boolean" | ||
| }, | ||
| "Nucleotide substitutions": { | ||
| "type": "boolean" | ||
| }, | ||
| "Single point mutation": { | ||
| "type": "boolean" | ||
| }, | ||
| "Translocation": { | ||
| "type": "boolean" | ||
| }, | ||
| "Transposon insertion": { | ||
| "type": "boolean" | ||
| }, | ||
| "Viral insertion": { | ||
| "type": "boolean" | ||
| }, | ||
| "Other": { | ||
| "type": "boolean" | ||
| } | ||
| } | ||
| }, | ||
| "proteinVariation": { | ||
| "type": "string", | ||
| "title": "Protein Variation" | ||
| }, | ||
| "sequenceVariation": { | ||
| "type": "string", | ||
| "title": "Sequence Variation" | ||
| }, | ||
| "publicationDOI": { | ||
| "type": "string", | ||
| "title": "Publication Link (DOI)" | ||
| }, | ||
| "itemAcquisition": { | ||
| "type": "string", | ||
| "title": "How to acquire", | ||
| "enum": [ | ||
| "Contact Developer", | ||
| "Purchase from Vendor", | ||
| "Other" | ||
| ], | ||
| "default": "Contact Developer" | ||
| } | ||
| }, | ||
| "allOf": [ | ||
| { | ||
| "if": { | ||
| "properties": { | ||
| "userInfo": { | ||
| "properties": { | ||
| "isDeveloper": { | ||
| "const": "No" | ||
| } | ||
| } | ||
| } | ||
| } | ||
| }, | ||
| "then": { | ||
| "properties": { | ||
| "userInfo": { | ||
| "properties": { | ||
| "developerName": { | ||
| "type": "string", | ||
| "title": "Developer Name" | ||
| }, | ||
| "developerAffiliation": { | ||
| "type": "string", | ||
| "title": "Developer Affiliation" | ||
| } | ||
| } | ||
| } | ||
| }, | ||
| "required": [ | ||
| "userInfo.developerName", | ||
| "userInfo.developerAffiliation" | ||
| ] | ||
| } | ||
| }, | ||
| { | ||
| "if": { | ||
| "properties": { | ||
| "basicInfo": { | ||
| "properties": { | ||
| "species": { | ||
| "const": "Other" | ||
| } | ||
| } | ||
| } | ||
| } | ||
| }, | ||
| "then": { | ||
| "properties": { | ||
| "basicInfo": { | ||
| "properties": { | ||
| "otherSpecies": { | ||
| "type": "string", | ||
| "title": "Other species name" | ||
| } | ||
| } | ||
| } | ||
| } | ||
| } | ||
| }, | ||
| { | ||
| "if": { | ||
| "properties": { | ||
| "itemAcquisition": { | ||
| "const": "Purchase from Vendor" | ||
| } | ||
| } | ||
| }, | ||
| "then": { | ||
| "properties": { | ||
| "vendor": { | ||
| "type": "string", | ||
| "title": "Vendor Name" | ||
| }, | ||
| "catalogNumber": { | ||
| "type": "string", | ||
| "title": "Catalog Number" | ||
| }, | ||
| "catalogURL": { | ||
| "type": "string", | ||
| "title": "Link to vendor page" | ||
| } | ||
| } | ||
| } | ||
| }, | ||
| { | ||
| "if": { | ||
| "properties": { | ||
| "itemAcquisition": { | ||
| "const": "Other" | ||
| } | ||
| } | ||
| }, | ||
| "then": { | ||
| "properties": { | ||
| "additionalDetails": { | ||
| "type": "string", | ||
| "title": "Please provide additional details." | ||
| } | ||
| }, | ||
| "required": [ | ||
| "additionalDetails" | ||
| ] | ||
| } | ||
| } | ||
| ], | ||
| "required": [ | ||
| "userInfo.first_name", | ||
| "userInfo.last_name", | ||
| "userInfo.email", | ||
| "userInfo.isDeveloper", | ||
| "animalModelName", | ||
| "description", | ||
| "backgroundStrain", | ||
| "animalModelDisease", | ||
| "animalModelManifestation" | ||
| ] | ||
| } |
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