Skip to content

Releases: ngs-fzb/HaemoSeq

v4.0

09 Apr 14:48
@mdiricks mdiricks
v.4.0
e851107
This commit was created on GitHub.com and signed with GitHub’s verified signature.
GPG key ID: B5690EEEBB952194
Learn about vigilant mode.
Compare
Choose a tag to compare
v4.0 Latest
Latest

HaemoSeq is now accessible as a comprehensive pipeline facilitated by a single wrapper script, which in turn initiates other secondary starter scripts (see folder Scripts/Main)

Assets 2
Loading

v.3.0

17 Aug 14:03
@mdiricks mdiricks
v.3.0
9ec83f1
This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
GPG key ID: 4AEE18F83AFDEB23
Expired
Learn about vigilant mode.
Compare
Choose a tag to compare
v.3.0

starter_Classification_Of_Haemophilus-v3.0.sh:
Added rules to to perform in silico resistance typing for H. sputorum and H. parainfluenzae

Class_Haemophilus_and_Serotyping-v3.0.fasta:
Added genes to perform in silico resistance typing for H. sputorum and H. parainfluenzae

Assets 2
Loading

v.2.0

09 Aug 15:12
@mdiricks mdiricks
v.2.0
2a4763b
This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
GPG key ID: 4AEE18F83AFDEB23
Expired
Learn about vigilant mode.
Compare
Choose a tag to compare
v.2.0

starter_Classification_Of_Haemophilus-v2.0.sh

  • Changed decision rules for serotyping of H. influenzae strains: NTHi= if no capsule genes (valid hits) are found. Capsule-deficient = if more then one but not all capsule genes are found
  • Added rule to differentiate H. paraphrohaemolyticus from H. parahaemolyticus

Class_Haemophilus_and_Serotyping-v2.0.fasta

  • Added lacZ gene to classification database and decision algorithm
Assets 2
Loading