Merge pull request #20 from nhsengland/AIB_fix_variables

Fix variable headings in md docs
nhsengland · Dec 19, 2023 · 005855c · 005855c
2 parents cdb9a04 + b1022c1
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diff --git a/docs/our_work/Publications.md b/docs/our_work/Publications.md
@@ -4,8 +4,6 @@ title: Connected Publications
 permalink: publications.html
 ---
 
-# {{page.title}}
-
 List of pre-releases and publications connected to our work
 
 [4] [https://doi.org/10.1101/2023.08.31.23294903](https://doi.org/10.1101/2023.08.31.23294903) - (Pre-Print)

diff --git a/docs/our_work/c245_synpath.md b/docs/our_work/c245_synpath.md
@@ -4,9 +4,6 @@ title: Building the Foundations for a Generic Patient Simulator
 permalink: c245_synpath.html
 ---
 
-
-# {{page.title}}
-
 > | "Developing an agent-based simulation for generating synthetic patient pathways and scenario modelling for healthcare specific implementations."   
 
 <p align="center">

diff --git a/docs/our_work/c250_nhscorpus.md b/docs/our_work/c250_nhscorpus.md
@@ -4,7 +4,6 @@ title: Considerations for Building a Language Corpus with a Focus on the NHS
 permalink: c250_nhscorpus.html
 ---
 
-# {{page.title}}
 > | "What are the available tools that could be used to build an NHS-focussed collection of texts which could help developers build better NLP tools for the healthcare system."   
 
 <p align="center">

diff --git a/docs/our_work/c338_poud.md b/docs/our_work/c338_poud.md
@@ -4,7 +4,6 @@ title: How to Assess the Privacy of Unstructured Data
 permalink: c338_poud.html
 ---
 
-# {{page.title}}
 > | "What are the privacy considerations that need to be addressed when dealing with unstructured healthcare text data "   
 
 <p align="center">

diff --git a/docs/our_work/c339_sas.md b/docs/our_work/c339_sas.md
@@ -4,7 +4,6 @@ title: Creating a Generic Adversarial Attack for any Synthetic Dataset
 permalink: c339_sas.html
 ---
 
-# {{page.title}}
 > | "Can the privacy of a generated dataset be assessed through downstream adversarial attacks to highlight the risk of reidentificiation "   
 
 <p align="center">

diff --git a/docs/our_work/c399_privfinger.md b/docs/our_work/c399_privfinger.md
@@ -4,7 +4,6 @@ title: Building a Tool to Assess the Privacy Risk of Text Data
 permalink: c399_privfinger.html
 ---
 
-# {{page.title}}
 > | "Can we generate usable privacy scores for text data to support understanding of privacy concerns and the anonymisation process "   
 
 <p align="center">

diff --git a/docs/our_work/ds218_rap_community_of_practice.md b/docs/our_work/ds218_rap_community_of_practice.md
@@ -4,7 +4,6 @@ title: NHS Reproducible Analytical Pipelines (RAP) Champion Squad
 permalink: ds218_rap_community_of_practice.html
 ---
 
-# {{page.title}}
 > | "Our roving squad of RAP champions have helped a number of teams not only transform their pipelines, but also tought them how to train others and produced guidance which is used by many other organisations."   
 
 <p align="center">

diff --git a/docs/our_work/p11_synpathdiabetes.md b/docs/our_work/p11_synpathdiabetes.md
@@ -4,7 +4,6 @@ title: Applying our SynPath Simulator to a Diabetes Pathway
 permalink: p11_synpathdiabetes.html
 ---
 
-# {{page.title}}
 > | "Exploration work into incorporating learning into a pathway simulator for diabetes.  This work has fed our current SynPathGo project to create synthetic patient pathways and a foundation for agent based modelling in the NHS."   
 
 <p align="center">

diff --git a/docs/our_work/p12_synthvae.md b/docs/our_work/p12_synthvae.md
@@ -4,7 +4,6 @@ title: Investigating Differential Privacy in a Variational AutoEncoder for Synth
 permalink: p12_synthvae.html
 ---
 
-# {{page.title}}
 > | "The initial creation of a variational autoencoder with differential privacy for generating single table tabular gaussian data.  This work demonstrated the feasibility of this approach for healthcare and fed into further interactions of the code base."   
 
 <p align="center">

diff --git a/docs/our_work/p14_mcr.md b/docs/our_work/p14_mcr.md
@@ -4,7 +4,6 @@ title: Using Model Class Reliance to Understnad the Impact of Commerical Data on
 permalink: p14_mcr.html
 ---
 
-# {{page.title}}
 > | "How to asses the value that commercial sales data of over-the-counter prescriptions has on respiratory death predictions"   
 
 <p align="center">

diff --git a/docs/our_work/p21_synthvae.md b/docs/our_work/p21_synthvae.md
@@ -4,7 +4,6 @@ title: Developing our SynthVAE code
 permalink: p21_synthvae2.html
 ---
 
-# {{page.title}}
 > | "Improving our variational autoencoder to consider fairness and to run on non-gaussian distributions"   
 
 <p align="center">

diff --git a/docs/our_work/p22_txtrayalign.md b/docs/our_work/p22_txtrayalign.md
@@ -4,7 +4,6 @@ title: TxtRayAlign
 permalink: p22_txtrayalign.html
 ---
 
-# {{page.title}}
 > | "Generating descriptive text from X-Ray images using contrastive learning on multi-modal data"   
 
 <p align="center">

diff --git a/docs/our_work/p23_stm.md b/docs/our_work/p23_stm.md
@@ -4,7 +4,6 @@ title: Text Analysis using Structural Topic Modelling
 permalink: p23_stm.html
 ---
 
-# {{page.title}}
 > | "Using metadata to support better topic modelling of free text responses"   
 
 <p align="center">

diff --git a/docs/our_work/p24_lime.md b/docs/our_work/p24_lime.md
@@ -4,7 +4,6 @@ title: Investigating Superpixels in LIME for Explaining Predictions of Facial Im
 permalink: p24_lime.html
 ---
 
-# {{page.title}}
 > | "Investigating explainability algorithms for granular healthcare images"   
 
 <p align="center">

diff --git a/docs/our_work/p31_txtrayalign2.md b/docs/our_work/p31_txtrayalign2.md
@@ -4,7 +4,6 @@ title: Adding a Clinical Focus to Evaulating Multi-Modal Data Representations
 permalink: p31_txtrayalign2.html
 ---
 
-# {{page.title}}
 > | "How to validate synthetic text generated from images for healthcare applications."   
 
 <p align="center">

diff --git a/docs/our_work/p32_phmdiabetes.md b/docs/our_work/p32_phmdiabetes.md
@@ -4,7 +4,6 @@ title: Inequalities in Diabetes from PHM Data
 permalink: p32_phmdiabetes.html
 ---
 
-# {{page.title}}
 > | "How to extract inequalities information from linked population health management data"   
 
 <p align="center">

diff --git a/docs/our_work/p33_patientsafetylms.md b/docs/our_work/p33_patientsafetylms.md
@@ -4,7 +4,6 @@ title: Investigating Applying and Evaulating a Language Model to Patient Safety
 permalink: p33_patientsafetylms.html
 ---
 
-# {{page.title}}
 > | "What's the most suitable models and workflows for represneting an NHS text dataset?"   
 
 <p align="center">

diff --git a/docs/our_work/p34_hypergraphs.md b/docs/our_work/p34_hypergraphs.md
@@ -4,7 +4,6 @@ title: Exploring Hypergraphs as a Technique for Understanding Impact of Co-Morbi
 permalink: p34_hypergraphs.html
 ---
 
-# {{page.title}}
 > | "In collaboration with Swansea University and the SAIL databank, this work focused on the generation of hypergraphs for investigating the individual and joint impact of comorbidities on a patient pathway.  This work will feed into two future projects to continue the creation of directed hypergraphs and then apply graph neural networks to demonstrate the process of extracting useful insights from these data. "   
 
 <p align="center">

diff --git a/docs/our_work/p42_hypergraphs2.md b/docs/our_work/p42_hypergraphs2.md
@@ -4,7 +4,6 @@ title: Including Mortality in our Implementation of Hypergraphs
 permalink: p42_hypergraphs2.html
 ---
 
-# {{page.title}}
 > | "A continuation of the previous work on hypergraphs than can extract the impact of predecessor and successor diseases on disease progression pathways.  This work in envisaged to include an implicit relationship to demographics and consider the impact of mortality."   
 
 <p align="center">

diff --git a/docs/our_work/p43_medcat.md b/docs/our_work/p43_medcat.md
@@ -4,7 +4,6 @@ title: Enriching Clinical Coding for Neurology Pathways using MedCAT
 permalink: p43_medcat.html
 ---
 
-# {{page.title}}
 > | "In collaboration with Lancaster teaching hospital and the University of Lancaster we aim to apply MedCat (an automated named entity recognition with linkage algorithm) to neurology letters to identify related SNOMED CT coding."   
 
 <p align="center">

diff --git a/requirements.txt b/requirements.txt
@@ -15,6 +15,7 @@ mkdocs-material
 mkdocs-material-extensions
 mkdocs-jupyter
 mkdocs-awesome-pages-plugin
+mkdocs-macros-plugin
 packaging
 pyparsing
 Pygments