Reduce groupings and rearrange projects

mkdocs.yml

@@ -24,155 +24,6 @@ nav:
   - Projects: 
     - Our Work: our_work/index.md
     - Project Tags: our_work/tags.md
-    - Our Team's Publications: our_work/Publications.md
-    - Main Work Areas:
-      - Large Predictive Analytics Products:
-        - Ambulance Handover Delay Predictor: our_work/ambulance-delay-predictor.md
-        - Bed Allocation: our_work/bed-allocation.md
-        - Inequalities in Diabetes from PHM Data: our_work/p32_phmdiabetes.md
-        - Length of Hospital Day Prediction: our_work/long-stay.md
-      - Data Science for Linked/Longitudinal Data:
-        - Data Linkage Enhancement: our_work/linkage.md
-      - Natural Language Processing Products:
-        - Applying & Evaluating a Language Model to Patient Safety Data: our_work/p33_patientsafetylms.md
-        - Data Lens: our_work/data-lens.md
-        - NHS Language Corpus: our_work/c250_nhscorpus.md
-        - NHS.UK Automatic Moderation of Ratings & Reviews: our_work/ratings-and-reviews.md
-        - Text Analysis using Structural Topic Modelling: our_work/p23_stm.md
-        - Tool to Asses Privacy Risk of Text Data: our_work/c399_privfinger.md
-        - Tool to Asses Privacy Risk of Text Data - Extended: our_work/ds255_privacyfp.md
-      - Data Science Capability:
-        - AI Deep Dive Workshops: our_work/ai-deep-dive.md
-        - AI Dictionary: our_work/ai-dictionary.md
-        - AI Skunkworks Team: our_work/ai-skunkworks.md
-        - NHS @Home Programme: our_work/open-safely.md
-        - Reproducible Analytical Pipelines Squad: our_work/ds218_rap_community_of_practice.md
-      - Research & Development:
-        - AI Models for Shortlisting Interview Candidates: our_work/casestudy-recruitment-shortlisting.md
-        - Creating a Generic Adversarial Attack for Synthetic Data: our_work/c339_sas.md
-        - CT Alignment & Lesion Detection: our_work/ct-alignment.md
-        - Deep Learning to Detect Adrenal Lesions in CT Scans: our_work/adrenal-lesions.md
-        - Differential Privacy in a VAE for Synthetic Data Generation: our_work/p12_synthvae.md
-        - Enriching Clinical Coding for Neurology Pathways using MedCAT: our_work/p43_medcat.md
-        - Generic Patient Simulator: our_work/c245_synpath.md
-        - Impact of Commercial Data on Predictions: our_work/p14_mcr.md
-        - Investigating Superpixels in LIME for Explaining Predictions of Facial Images: our_work/p24_lime.md
-        - Nursing Placement Scheduled Optimisation: our_work/nursing-placement-optimisation.md
-        - Parkinson's Disease Pathology Prediction: our_work/parkinsons-detection.md
-        - Predicting Negligence Claims: our_work/nhs-resolution.md
-        - Privacy of Unstructured Data: our_work/c338_poud.md
-        - Renal Health Prediction: our_work/renal-health-prediction.md
-        - SynPath Simulator on Diabetes Pathway: our_work/p11_synpathdiabetes.md
-        - Synthetic Data From Real Data: our_work/casestudy-synthetic-data-pipeline.md
-        - Synthetic Data Generation Pipeline: our_work/synthetic-data-pipeline.md
-        - TxtRayAlign: our_work/p22_txtrayalign.md
-        - Understanding the Impact of Co-Morbidities: our_work/p34_hypergraphs.md
-    - Problems Explored:
-      - Healthcare Efficiency: 
-        - AI Models for Shortlisting Interview Candidates: our_work/casestudy-recruitment-shortlisting.md
-        - Ambulance Handover Delay Predictor: our_work/ambulance-delay-predictor.md
-        - Bed Allocation: our_work/bed-allocation.md
-      - Ease of Diagnosis: 
-        - CT Alignment & Lesion Detection: our_work/ct-alignment.md
-        - Deep Learning to Detect Adrenal Lesions in CT Scans: our_work/adrenal-lesions.md
-        - Parkinson's Disease Pathology Prediction: our_work/parkinsons-detection.md
-        - Renal Health Prediction: our_work/renal-health-prediction.md
-        - TxtRayAlign: our_work/p22_txtrayalign.md
-      - Data Access & Privacy:
-        - Applying & Evaluating a Language Model to Patient Safety Data: our_work/p33_patientsafetylms.md
-        - Creating a Generic Adversarial Attack for Synthetic Data: our_work/c339_sas.md
-        - Differential Privacy in a VAE for Synthetic Data Generation: our_work/p12_synthvae.md
-        - Generic Patient Simulator: our_work/c245_synpath.md
-        - NHS @Home Programme: our_work/open-safely.md
-        - Privacy of Unstructured Data: our_work/c338_poud.md
-        - Synthetic Data From Real Data: our_work/casestudy-synthetic-data-pipeline.md
-        - Synthetic Data Generation Pipeline: our_work/synthetic-data-pipeline.md
-        - SynPath Simulator on Diabetes Pathway: our_work/p11_synpathdiabetes.md
-        - Tool to Asses Privacy Risk of Text Data: our_work/c399_privfinger.md
-        - Tool to Asses Privacy Risk of Text Data - Extended: our_work/ds255_privacyfp.md
-      - Following Patient Pathways:
-        - Data Linkage Enhancement: our_work/linkage.md
-        - Understanding the Impact of Co-Morbidities: our_work/p34_hypergraphs.md
-      - Resource Usage:
-        - Enriching Clinical Coding for Neurology Pathways using MedCAT: our_work/p43_medcat.md
-        - Length of Hospital Day Prediction: our_work/long-stay.md
-        - NHS.UK Automatic Moderation of Ratings & Reviews: our_work/ratings-and-reviews.md
-        - Nursing Placement Scheduled Optimisation: our_work/nursing-placement-optimisation.md
-        - Predicting Negligence Claims: our_work/nhs-resolution.md
-      - Health Inequality: 
-        - Inequalities in Diabetes from PHM Data: our_work/p32_phmdiabetes.md
-    - Model Types:
-      - AI:
-        - AI Deep Dive Workshops: our_work/ai-deep-dive.md
-        - AI Dictionary: our_work/ai-dictionary.md
-      - Bayesian Forecasting: 
-        - Bed Allocation: our_work/bed-allocation.md
-        - Predicting Negligence Claims: our_work/nhs-resolution.md
-      - Deep Learning:
-        - CT Alignment & Lesion Detection: our_work/ct-alignment.md
-        - Deep Learning to Detect Adrenal Lesions in CT Scans: our_work/adrenal-lesions.md
-        - Parkinson's Disease Pathology Prediction: our_work/parkinsons-detection.md
-        - Renal Health Prediction: our_work/renal-health-prediction.md
-      - Random Forest:
-        - Ambulance Handover Delay Predictor: our_work/ambulance-delay-predictor.md
-      - Data Model/Synthetic Data:
-        - Differential Privacy in a VAE for Synthetic Data Generation: our_work/p12_synthvae.md
-        - Generic Patient Simulator: our_work/c245_synpath.md
-        - Synthetic Data From Real Data: our_work/casestudy-synthetic-data-pipeline.md
-        - Synthetic Data Generation Pipeline: our_work/synthetic-data-pipeline.md
-        - SynPath Simulator on Diabetes Pathway: our_work/p11_synpathdiabetes.md
-      - NLP/LLM:
-        - AI Models for Shortlisting Interview Candidates: our_work/casestudy-recruitment-shortlisting.md
-        - Applying & Evaluating a Language Model to Patient Safety Data: our_work/p33_patientsafetylms.md
-        - Data Lens: our_work/data-lens.md
-        - NHS Language Corpus: our_work/c250_nhscorpus.md
-        - NHS.UK Automatic Moderation of Ratings & Reviews: our_work/ratings-and-reviews.md
-        - Text Analysis using Structural Topic Modelling: our_work/p23_stm.md
-        - Tool to Asses Privacy Risk of Text Data: our_work/c399_privfinger.md
-        - Tool to Asses Privacy Risk of Text Data - Extended: our_work/ds255_privacyfp.md
-        - TxtRayAlign: our_work/p22_txtrayalign.md
-      - GAN:
-        - Creating a Generic Adversarial Attack for Synthetic Data: our_work/c339_sas.md
-        - Length of Hospital Day Prediction: our_work/long-stay.md
-      - Linkage Algorithm:
-        - Data Linkage Enhancement: our_work/linkage.md
-        - Enriching Clinical Coding for Neurology Pathways using MedCAT: our_work/p43_medcat.md
-      - Genetic Algorithm:
-        - Nursing Placement Scheduled Optimisation: our_work/nursing-placement-optimisation.md
-      - Model Class Reliance:
-        - Impact of Commercial Data on Predictions: our_work/p14_mcr.md
-      - LIME:
-        - Investigating Superpixels in LIME for Explaining Predictions of Facial Images: our_work/p24_lime.md
-      - Logistic Regression:
-        - Inequalities in Diabetes from PHM Data: our_work/p32_phmdiabetes.md
-      - Hypergraphs: 
-        - Understanding the Impact of Co-Morbidities: our_work/p34_hypergraphs.md
-    - Healthcare Domain:
-      - Urgent & Emergency Care:
-        - Ambulance Handover Delay Predictor: our_work/ambulance-delay-predictor.md
-      - Diagnostics:
-        - CT Alignment & Lesion Detection: our_work/ct-alignment.md
-        - Deep Learning to Detect Adrenal Lesions in CT Scans: our_work/adrenal-lesions.md
-        - Enriching Clinical Coding for Neurology Pathways using MedCAT: our_work/p43_medcat.md
-        - Parkinson's Disease Pathology Prediction: our_work/parkinsons-detection.md
-        - Renal Health Prediction: our_work/renal-health-prediction.md
-        - SynPath Simulator on Diabetes Pathway: our_work/p11_synpathdiabetes.md
-        - Understanding the Impact of Co-Morbidities: our_work/p34_hypergraphs.md
-      - Use of Resources: 
-        - Bed Allocation: our_work/bed-allocation.md
-        - NHS.UK Automatic Moderation of Ratings & Reviews: our_work/ratings-and-reviews.md
-        - Predicting Negligence Claims: our_work/nhs-resolution.md
-        - Reproducible Analytical Pipelines Squad: our_work/ds218_rap_community_of_practice.md
-        - Length of Hospital Day Prediction: our_work/long-stay.md
-      - Workforce: 
-        - AI Models for Shortlisting Interview Candidates: our_work/casestudy-recruitment-shortlisting.md
-        - Applying & Evaluating a Language Model to Patient Safety Data: our_work/p33_patientsafetylms.md
-        - Nursing Placement Scheduled Optimisation: our_work/nursing-placement-optimisation.md
-        - Text Analysis using Structural Topic Modelling: our_work/p23_stm.md
-      - Primary Care:
-        - NHS @Home Programme: our_work/open-safely.md
-      - Prevention & Health Inequalities:
-        - Inequalities in Diabetes from PHM Data: our_work/p32_phmdiabetes.md
     - Past/Current Projects:
       - Current Projects:
         - AI Dictionary: our_work/ai-dictionary.md
@@ -184,41 +35,96 @@ nav:
         - 2023:
           - AI Models for Shortlisting Interview Candidates: our_work/casestudy-recruitment-shortlisting.md
           - AI Skunkworks Team: our_work/ai-skunkworks.md
-          - Applying & Evaluating a Language Model to Patient Safety Data: our_work/p33_patientsafetylms.md
           - Deep Learning to Detect Adrenal Lesions in CT Scans: our_work/adrenal-lesions.md
+          - Enriching Clinical Coding for Neurology Pathways using MedCAT: our_work/p43_medcat.md
+          - Including Mortality in our Implementation of Hypergraphs: our_work/p42_hypergraphs2.md
           - Parkinson's Disease Pathology Prediction: our_work/parkinsons-detection.md
           - Tool to Asses Privacy Risk of Text Data: our_work/c399_privfinger.md
         - 2022:
+          - Adding a Clinical Focus to Evaluating MM Data Representations: our_work/p31_txtrayalign2.md
           - Ambulance Handover Delay Predictor: our_work/ambulance-delay-predictor.md
+          - Applying & Evaluating a Language Model to Patient Safety Data: our_work/p33_patientsafetylms.md
           - Bed Allocation: our_work/bed-allocation.md
-          - Differential Privacy in a VAE for Synthetic Data Generation: our_work/p12_synthvae.md
           - Generic Patient Simulator: our_work/c245_synpath.md
-          - Impact of Commercial Data on Predictions: our_work/p14_mcr.md
           - Inequalities in Diabetes from PHM Data: our_work/p32_phmdiabetes.md
           - Investigating Superpixels in LIME for Explaining Predictions of Facial Images: our_work/p24_lime.md
-          - NHS Language Corpus: our_work/c250_nhscorpus.md
+          - Long Stayer Risk Stratification Baseline Models: our_work/long-stay-baseline.md
           - Nursing Placement Scheduled Optimisation: our_work/nursing-placement-optimisation.md
           - Privacy of Unstructured Data: our_work/c338_poud.md
           - Renal Health Prediction: our_work/renal-health-prediction.md
           - Synthetic Data From Real Data: our_work/casestudy-synthetic-data-pipeline.md
           - Synthetic Data Generation Pipeline: our_work/synthetic-data-pipeline.md
-          - Text Analysis using Structural Topic Modelling: our_work/p23_stm.md
-          - TxtRayAlign: our_work/p22_txtrayalign.md
+          - Understanding the Impact of Co-Morbidities: our_work/p34_hypergraphs.md
         - 2021: 
+          - AI Deep Dive Workshops: our_work/ai-deep-dive.md
           - CT Alignment & Lesion Detection: our_work/ct-alignment.md
+          - Creating a Generic Adversarial Attack for Synthetic Data: our_work/c339_sas.md
+          - Developing SynthVAE: our_work/p21_synthvae.md 
+          - Differential Privacy in a VAE for Synthetic Data Generation: our_work/p12_synthvae.md
+          - Impact of Commercial Data on Predictions: our_work/p14_mcr.md
           - Length of Hospital Day Prediction: our_work/long-stay.md
+          - NHS Language Corpus: our_work/c250_nhscorpus.md
+          - NHS @Home Programme: our_work/open-safely.md
           - Predicting Negligence Claims: our_work/nhs-resolution.md
           - SynPath Simulator on Diabetes Pathway: our_work/p11_synpathdiabetes.md
+          - Text Analysis using Structural Topic Modelling: our_work/p23_stm.md
+          - TxtRayAlign: our_work/p22_txtrayalign.md
         - 2020: 
           - Data Lens: our_work/data-lens.md
-        - Unknown Year:
-          - AI Deep Dive Workshops: our_work/ai-deep-dive.md
-          - Creating a Generic Adversarial Attack for Synthetic Data: our_work/c339_sas.md
+    - Main Work Areas:
+      - Predictive Analytics Products:
+        - Ambulance Handover Delay Predictor: our_work/ambulance-delay-predictor.md
+        - Bed Allocation: our_work/bed-allocation.md
+        - Impact of Commercial Data on Predictions: our_work/p14_mcr.md
+        - Length of Hospital Day Prediction: our_work/long-stay.md
+        - Long Stayer Risk Stratification Baseline Models: our_work/long-stay-baseline.md
+        - Parkinson's Disease Pathology Prediction: our_work/parkinsons-detection.md
+        - Predicting Negligence Claims: our_work/nhs-resolution.md
+        - Renal Health Prediction: our_work/renal-health-prediction.md
+      - Data Science for Linked/Longitudinal Data:
+        - Data Linkage Enhancement: our_work/linkage.md
+        - Inequalities in Diabetes from PHM Data: our_work/p32_phmdiabetes.md
+      - Natural Language Processing Products:
+        - AI Models for Shortlisting Interview Candidates: our_work/casestudy-recruitment-shortlisting.md
+        - Data Lens: our_work/data-lens.md
+        - NHS.UK Automatic Moderation of Ratings & Reviews: our_work/ratings-and-reviews.md
+        - Tool to Asses Privacy Risk of Text Data: our_work/c399_privfinger.md
+        - Tool to Asses Privacy Risk of Text Data - Extended: our_work/ds255_privacyfp.md
+      - Data Science Capability:
+        - AI Deep Dive Workshops: our_work/ai-deep-dive.md
+        - AI Dictionary: our_work/ai-dictionary.md
+        - AI Skunkworks Team: our_work/ai-skunkworks.md
+        - NHS @Home Programme: our_work/open-safely.md
+        - Reproducible Analytical Pipelines Squad: our_work/ds218_rap_community_of_practice.md
+      - Research & Development:
+        - Computer Vision retired:
+          - CT Alignment & Lesion Detection: our_work/ct-alignment.md
+          - Deep Learning to Detect Adrenal Lesions in CT Scans: our_work/adrenal-lesions.md
+          - Investigating Superpixels in LIME for Explaining Predictions of Facial Images: our_work/p24_lime.md
+        - Natural Language Processing:
+          - Adding a Clinical Focus to Evaluating MM Data Representations: our_work/p31_txtrayalign2.md
+          - Applying & Evaluating a Language Model to Patient Safety Data: our_work/p33_patientsafetylms.md
           - Enriching Clinical Coding for Neurology Pathways using MedCAT: our_work/p43_medcat.md
-          - NHS @Home Programme: our_work/open-safely.md
+          - NHS Language Corpus: our_work/c250_nhscorpus.md
+          - Privacy of Unstructured Data: our_work/c338_poud.md
+          - Text Analysis using Structural Topic Modelling: our_work/p23_stm.md
+          - TxtRayAlign: our_work/p22_txtrayalign.md
+        - Representations of Complex Data:
+          - Including Mortality in our Implementation of Hypergraphs: our_work/p42_hypergraphs2.md
           - Understanding the Impact of Co-Morbidities: our_work/p34_hypergraphs.md
+        - Synthetic Data:
+          - Creating a Generic Adversarial Attack for Synthetic Data: our_work/c339_sas.md
+          - Developing SynthVAE: our_work/p21_synthvae.md 
+          - Differential Privacy in a VAE for Synthetic Data Generation: our_work/p12_synthvae.md
+          - Generic Patient Simulator: our_work/c245_synpath.md
+          - SynPath Simulator on Diabetes Pathway: our_work/p11_synpathdiabetes.md
+          - Synthetic Data From Real Data: our_work/casestudy-synthetic-data-pipeline.md
+          - Synthetic Data Generation Pipeline: our_work/synthetic-data-pipeline.md
+        - Nursing Placement Scheduled Optimisation: our_work/nursing-placement-optimisation.md
+
     - Not Categorized:
       - ... | flat | regex=our_work/(?!template-project\.md).*\.md
+    - Our Team's Publications: our_work/Publications.md
   # - Tools: 
   #   - ... | flat | tools/*.md
   - Playbooks: playbooks.md