ViralMSA v1.0.4

• Added -u/--update to usage

ViralMSA v1.0.3

• Check for permission error when updating
  • E.g. if ViralMSA is installed in /usr/local/bin or similar
  • Suggest the user to run as root

ViralMSA v1.0.2

• Warn user if not all sequences appeared in output
  • Happens with some aligners (highly recommend Minimap2 to avoid this issue)

ViralMSA v1.0.1

• Added ability to update ViralMSA directly from script

ViralMSA v1.0.0

• Initial version of ViralMSA
• Supports the following mappers:
  • Minimap2 (default)
  • bowtie2
  • HISAT2
  • STAR
• The default of Minimap2 is strongly recommended for whole viral genomes due to both accuracy and performance.