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Merge pull request #1326 from nipreps/maint/clean-pandas-futurewarning
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MAINT: Remove *Pandas*'s ``FutureWarning``
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oesteban authored Aug 20, 2024
2 parents 14120ad + 4a9e4d3 commit 4cfe212
Showing 1 changed file with 4 additions and 6 deletions.
10 changes: 4 additions & 6 deletions mriqc/interfaces/functional.py
Original file line number Diff line number Diff line change
Expand Up @@ -361,24 +361,22 @@ def _run_interface(self, runtime):
# DVARS
dvars = pd.read_csv(
self.inputs.dvars,
delim_whitespace=True,
sep=r'\s+',
skiprows=1, # column names have spaces
header=None,
names=['dvars_std', 'dvars_nstd', 'dvars_vstd'],
)
dvars.index = pd.RangeIndex(1, timeseries.index.max() + 1)

# FD
fd = pd.read_csv(
self.inputs.fd, delim_whitespace=True, header=0, names=['framewise_displacement']
)
fd = pd.read_csv(self.inputs.fd, sep=r'\s+', header=0, names=['framewise_displacement'])
fd.index = pd.RangeIndex(1, timeseries.index.max() + 1)

# AQI
aqi = pd.read_csv(self.inputs.quality, delim_whitespace=True, header=None, names=['aqi'])
aqi = pd.read_csv(self.inputs.quality, sep=r'\s+', header=None, names=['aqi'])

# Outliers
aor = pd.read_csv(self.inputs.outliers, delim_whitespace=True, header=None, names=['aor'])
aor = pd.read_csv(self.inputs.outliers, sep=r'\s+', header=None, names=['aor'])

timeseries = pd.concat((timeseries, dvars, fd, aqi, aor), axis=1)

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