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Use bioconda for snakemake related packages only
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Previously, with the full range of packages available from bioconda,
conda-forge and default channels, micromamba failed to solve the environment
specification.
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thomas-fred committed Apr 12, 2024
1 parent a091d7c commit 6909760
Showing 1 changed file with 3 additions and 4 deletions.
7 changes: 3 additions & 4 deletions environment.yml
Original file line number Diff line number Diff line change
@@ -1,7 +1,6 @@
name: datapkg
channels:
- bioconda # for snakemake
- conda-forge # for most other packages
- conda-forge
- defaults
dependencies:
- python=3.11
Expand All @@ -15,5 +14,5 @@ dependencies:
- osmium-tool==1.16.0 # openstreetmap extracts
- pyyaml # read YAML files
- pyogrio # faster geospatial i/o
- snakemake==7.32.4 # workflow management
- snakefmt # Snakefile formatting
- bioconda::snakemake==7.32.4 # workflow management
- bioconda::snakefmt # Snakefile formatting

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