PepDream: automatic feature extraction for peptide identification from tandem mass spectra
PepDream is primarily licensed under the MIT License. However, specific portions are subject to different licenses as follows:
=== Open Software License 3.0 (OSL-3) ===
The following functions or portions of code are derived from external sources and are subject to the Open Software License 3.0 (OSL-3):
-
pepdream/qvalue_acc.pyx - calculate_qvalue
- Source: proteoTorch (https://github.com/proteoTorch/proteoTorch)
- Modifications: Optimized the code for improved performance.
-
pepdream/qvalue_utils.py - accumulate & calculate_qvalue
- Source: proteoTorch (https://github.com/proteoTorch/proteoTorch)
- Modifications: Removed unused code.
=== Apache License 2.0 ===
The following functions or portions of code are derived from external sources and are subject to the Apache License 2.0:
-
pepdream/constants.py
- Source: Prosit (https://github.com/kusterlab/prosit)
- Modifications: Selected a subset of the constants.
-
pepdream/process_msms.py - functions marked with
copied from Prosit (and modified)- Source: Prosit (https://github.com/kusterlab/prosit)
- Modifications: Check out process_msms.py for details.