-
Notifications
You must be signed in to change notification settings - Fork 1
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
Added vignette with algo description (#11)
- Loading branch information
Showing
10 changed files
with
346 additions
and
1 deletion.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,7 +1,7 @@ | ||
Package: ClustImpute | ||
Type: Package | ||
Title: K-means clustering with build-in missing data imputation | ||
Version: 0.1.5 | ||
Version: 0.1.6 | ||
Author: Oliver Pfaffel | ||
Maintainer: Oliver Pfaffel <[email protected]> | ||
Description: This clustering algorithm deals with missing data via weights that are imposed on missings and successively increased. See the vignette for details. | ||
|
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Binary file not shown.
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,2 @@ | ||
\Sconcordance{concordance:description_of_algorithm.tex:description_of_algorithm.Rnw:% | ||
1 5 1 1 0 3 1} |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,9 @@ | ||
%\VignetteIndexEntry{Description of the algorithm} | ||
%\VignetteAuthor{Oliver Pfaffel} | ||
|
||
\documentclass{article} | ||
\usepackage{pdfpages} | ||
\begin{document} | ||
\SweaveOpts{concordance=TRUE} | ||
\includepdf[pages=-, fitpaper=true]{ClustImpute_description.pdf} | ||
\end{document} |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,314 @@ | ||
This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020/W32TeX) (preloaded format=pdflatex 2020.12.12) 12 DEC 2020 15:21 | ||
entering extended mode | ||
restricted \write18 enabled. | ||
%&-line parsing enabled. | ||
**description_of_algorithm.tex | ||
(./description_of_algorithm.tex | ||
LaTeX2e <2020-10-01> patch level 2 | ||
L3 programming layer <2020-12-07> xparse <2020-03-03> | ||
(c:/Users/opfaf/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/base/article.cls | ||
Document Class: article 2020/04/10 v1.4m Standard LaTeX document class | ||
(c:/Users/opfaf/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/base/size10.clo | ||
File: size10.clo 2020/04/10 v1.4m Standard LaTeX file (size option) | ||
) | ||
\c@part=\count177 | ||
\c@section=\count178 | ||
\c@subsection=\count179 | ||
\c@subsubsection=\count180 | ||
\c@paragraph=\count181 | ||
\c@subparagraph=\count182 | ||
\c@figure=\count183 | ||
\c@table=\count184 | ||
\abovecaptionskip=\skip47 | ||
\belowcaptionskip=\skip48 | ||
\bibindent=\dimen138 | ||
) | ||
(c:/Users/opfaf/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/pdfpages/pdfpages. | ||
sty | ||
Package: pdfpages 2020/01/28 v0.5q Insert pages of external PDF documents (AM) | ||
|
||
(c:/Users/opfaf/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/base/ifthen.sty | ||
Package: ifthen 2014/09/29 v1.1c Standard LaTeX ifthen package (DPC) | ||
) | ||
(c:/Users/opfaf/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/tools/calc.sty | ||
Package: calc 2017/05/25 v4.3 Infix arithmetic (KKT,FJ) | ||
\calc@Acount=\count185 | ||
\calc@Bcount=\count186 | ||
\calc@Adimen=\dimen139 | ||
\calc@Bdimen=\dimen140 | ||
\calc@Askip=\skip49 | ||
\calc@Bskip=\skip50 | ||
LaTeX Info: Redefining \setlength on input line 80. | ||
LaTeX Info: Redefining \addtolength on input line 81. | ||
\calc@Ccount=\count187 | ||
\calc@Cskip=\skip51 | ||
) | ||
(c:/Users/opfaf/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/eso-pic/eso-pic.st | ||
y | ||
Package: eso-pic 2020/10/14 v3.0a eso-pic (RN) | ||
\ESO@tempdima=\dimen141 | ||
\ESO@tempdimb=\dimen142 | ||
|
||
(c:/Users/opfaf/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/graphics/keyval.st | ||
y | ||
Package: keyval 2014/10/28 v1.15 key=value parser (DPC) | ||
\KV@toks@=\toks15 | ||
) | ||
(c:/Users/opfaf/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/xcolor/xcolor.sty | ||
Package: xcolor 2016/05/11 v2.12 LaTeX color extensions (UK) | ||
|
||
(c:/Users/opfaf/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/graphics-cfg/color | ||
.cfg | ||
File: color.cfg 2016/01/02 v1.6 sample color configuration | ||
) | ||
Package xcolor Info: Driver file: pdftex.def on input line 225. | ||
|
||
(c:/Users/opfaf/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/graphics-def/pdfte | ||
x.def | ||
File: pdftex.def 2020/10/05 v1.2a Graphics/color driver for pdftex | ||
) | ||
Package xcolor Info: Model `cmy' substituted by `cmy0' on input line 1348. | ||
Package xcolor Info: Model `hsb' substituted by `rgb' on input line 1352. | ||
Package xcolor Info: Model `RGB' extended on input line 1364. | ||
Package xcolor Info: Model `HTML' substituted by `rgb' on input line 1366. | ||
Package xcolor Info: Model `Hsb' substituted by `hsb' on input line 1367. | ||
Package xcolor Info: Model `tHsb' substituted by `hsb' on input line 1368. | ||
Package xcolor Info: Model `HSB' substituted by `hsb' on input line 1369. | ||
Package xcolor Info: Model `Gray' substituted by `gray' on input line 1370. | ||
Package xcolor Info: Model `wave' substituted by `hsb' on input line 1371. | ||
)) | ||
(c:/Users/opfaf/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/graphics/graphicx. | ||
sty | ||
Package: graphicx 2020/09/09 v1.2b Enhanced LaTeX Graphics (DPC,SPQR) | ||
|
||
(c:/Users/opfaf/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/graphics/graphics. | ||
sty | ||
Package: graphics 2020/08/30 v1.4c Standard LaTeX Graphics (DPC,SPQR) | ||
|
||
(c:/Users/opfaf/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/graphics/trig.sty | ||
Package: trig 2016/01/03 v1.10 sin cos tan (DPC) | ||
) | ||
(c:/Users/opfaf/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/graphics-cfg/graph | ||
ics.cfg | ||
File: graphics.cfg 2016/06/04 v1.11 sample graphics configuration | ||
) | ||
Package graphics Info: Driver file: pdftex.def on input line 105. | ||
) | ||
\Gin@req@height=\dimen143 | ||
\Gin@req@width=\dimen144 | ||
) | ||
\AM@pagewidth=\dimen145 | ||
\AM@pageheight=\dimen146 | ||
|
||
(c:/Users/opfaf/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/pdfpages/pppdftex. | ||
def | ||
File: pppdftex.def 2020/01/28 v0.5q Pdfpages driver for pdfTeX (AM) | ||
) | ||
\AM@pagebox=\box47 | ||
\AM@global@opts=\toks16 | ||
\AM@pagecnt=\count188 | ||
\AM@toc@title=\toks17 | ||
\c@AM@survey=\count189 | ||
\AM@templatesizebox=\box48 | ||
) (c:/Program Files/R/R-4.0.2/share/texmf/tex/latex/Sweave.sty | ||
Package: Sweave | ||
|
||
(c:/Users/opfaf/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/fancyvrb/fancyvrb. | ||
sty | ||
Package: fancyvrb 2020/05/03 v3.6 verbatim text (tvz,hv) | ||
\FV@CodeLineNo=\count190 | ||
\FV@InFile=\read2 | ||
\FV@TabBox=\box49 | ||
\c@FancyVerbLine=\count191 | ||
\FV@StepNumber=\count192 | ||
\FV@OutFile=\write3 | ||
) | ||
(c:/Users/opfaf/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/base/textcomp.sty | ||
Package: textcomp 2020/02/02 v2.0n Standard LaTeX package | ||
) (c:/Users/opfaf/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/base/fontenc.sty | ||
Package: fontenc 2020/08/10 v2.0s Standard LaTeX package | ||
) (c:/Users/opfaf/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/ae/ae.sty | ||
Package: ae 2001/02/12 1.3 Almost European Computer Modern | ||
|
||
(c:/Users/opfaf/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/base/fontenc.sty | ||
Package: fontenc 2020/08/10 v2.0s Standard LaTeX package | ||
))) | ||
LaTeX Font Info: Trying to load font information for T1+aer on input line 7. | ||
|
||
(c:/Users/opfaf/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/ae/t1aer.fd | ||
File: t1aer.fd 1997/11/16 Font definitions for T1/aer. | ||
) | ||
(c:/Users/opfaf/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/l3backend/l3backen | ||
d-pdftex.def | ||
File: l3backend-pdftex.def 2020-09-24 L3 backend support: PDF output (pdfTeX) | ||
\l__kernel_color_stack_int=\count193 | ||
\l__pdf_internal_box=\box50 | ||
) (./description_of_algorithm.aux) | ||
\openout1 = `description_of_algorithm.aux'. | ||
|
||
LaTeX Font Info: Checking defaults for OML/cmm/m/it on input line 7. | ||
LaTeX Font Info: ... okay on input line 7. | ||
LaTeX Font Info: Checking defaults for OMS/cmsy/m/n on input line 7. | ||
LaTeX Font Info: ... okay on input line 7. | ||
LaTeX Font Info: Checking defaults for OT1/cmr/m/n on input line 7. | ||
LaTeX Font Info: ... okay on input line 7. | ||
LaTeX Font Info: Checking defaults for T1/cmr/m/n on input line 7. | ||
LaTeX Font Info: ... okay on input line 7. | ||
LaTeX Font Info: Checking defaults for TS1/cmr/m/n on input line 7. | ||
LaTeX Font Info: ... okay on input line 7. | ||
LaTeX Font Info: Checking defaults for OMX/cmex/m/n on input line 7. | ||
LaTeX Font Info: ... okay on input line 7. | ||
LaTeX Font Info: Checking defaults for U/cmr/m/n on input line 7. | ||
LaTeX Font Info: ... okay on input line 7. | ||
|
||
(c:/Users/opfaf/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/epstopdf-pkg/epsto | ||
pdf-base.sty | ||
Package: epstopdf-base 2020-01-24 v2.11 Base part for package epstopdf | ||
|
||
(c:/Users/opfaf/AppData/Roaming/TinyTeX/texmf-dist/tex/generic/infwarerr/infwar | ||
err.sty | ||
Package: infwarerr 2019/12/03 v1.5 Providing info/warning/error messages (HO) | ||
) | ||
(c:/Users/opfaf/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/grfext/grfext.sty | ||
Package: grfext 2019/12/03 v1.3 Manage graphics extensions (HO) | ||
|
||
(c:/Users/opfaf/AppData/Roaming/TinyTeX/texmf-dist/tex/generic/kvdefinekeys/kvd | ||
efinekeys.sty | ||
Package: kvdefinekeys 2019-12-19 v1.6 Define keys (HO) | ||
)) | ||
(c:/Users/opfaf/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/kvoptions/kvoption | ||
s.sty | ||
Package: kvoptions 2020-10-07 v3.14 Key value format for package options (HO) | ||
|
||
(c:/Users/opfaf/AppData/Roaming/TinyTeX/texmf-dist/tex/generic/ltxcmds/ltxcmds. | ||
sty | ||
Package: ltxcmds 2020-05-10 v1.25 LaTeX kernel commands for general use (HO) | ||
) | ||
(c:/Users/opfaf/AppData/Roaming/TinyTeX/texmf-dist/tex/generic/kvsetkeys/kvsetk | ||
eys.sty | ||
Package: kvsetkeys 2019/12/15 v1.18 Key value parser (HO) | ||
)) | ||
(c:/Users/opfaf/AppData/Roaming/TinyTeX/texmf-dist/tex/generic/pdftexcmds/pdfte | ||
xcmds.sty | ||
Package: pdftexcmds 2020-06-27 v0.33 Utility functions of pdfTeX for LuaTeX (HO | ||
) | ||
|
||
(c:/Users/opfaf/AppData/Roaming/TinyTeX/texmf-dist/tex/generic/iftex/iftex.sty | ||
Package: iftex 2020/03/06 v1.0d TeX engine tests | ||
) | ||
Package pdftexcmds Info: \pdf@primitive is available. | ||
Package pdftexcmds Info: \pdf@ifprimitive is available. | ||
Package pdftexcmds Info: \pdfdraftmode found. | ||
) | ||
Package epstopdf-base Info: Redefining graphics rule for `.eps' on input line 4 | ||
85. | ||
Package grfext Info: Graphics extension search list: | ||
(grfext) [.pdf,.png,.jpg,.mps,.jpeg,.jbig2,.jb2,.PDF,.PNG,.JPG,.JPE | ||
G,.JBIG2,.JB2,.eps] | ||
(grfext) \AppendGraphicsExtensions on input line 504. | ||
|
||
(c:/Users/opfaf/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/latexconfig/epstop | ||
df-sys.cfg | ||
File: epstopdf-sys.cfg 2010/07/13 v1.3 Configuration of (r)epstopdf for TeX Liv | ||
e | ||
)) | ||
(c:/Users/opfaf/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/pdflscape/pdflscap | ||
e.sty | ||
Package: pdflscape 2019/12/05 v0.12 Display of landscape pages in PDF (HO) | ||
|
||
(c:/Users/opfaf/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/graphics/lscape.st | ||
y | ||
Package: lscape 2020/05/28 v3.02 Landscape Pages (DPC) | ||
) | ||
Package pdflscape Info: Auto-detected driver: pdftex on input line 81. | ||
) (./description_of_algorithm-concordance.tex) | ||
<ClustImpute_description.pdf, id=2, 597.50829pt x 845.0471pt> | ||
File: ClustImpute_description.pdf Graphic file (type pdf) | ||
<use ClustImpute_description.pdf> | ||
Package pdftex.def Info: ClustImpute_description.pdf used on input line 9. | ||
(pdftex.def) Requested size: 276.00105pt x 390.33818pt. | ||
File: ClustImpute_description.pdf Graphic file (type pdf) | ||
<use ClustImpute_description.pdf> | ||
Package pdftex.def Info: ClustImpute_description.pdf used on input line 9. | ||
(pdftex.def) Requested size: 276.00105pt x 390.33818pt. | ||
<ClustImpute_description.pdf, id=5, page=1, 597.50829pt x 845.0471pt> | ||
File: ClustImpute_description.pdf Graphic file (type pdf) | ||
<use ClustImpute_description.pdf, page 1> | ||
Package pdftex.def Info: ClustImpute_description.pdf , page1 used on input line | ||
9. | ||
(pdftex.def) Requested size: 597.50682pt x 845.04504pt. | ||
File: ClustImpute_description.pdf Graphic file (type pdf) | ||
<use ClustImpute_description.pdf, page 1> | ||
Package pdftex.def Info: ClustImpute_description.pdf , page1 used on input line | ||
9. | ||
(pdftex.def) Requested size: 597.53416pt x 845.08372pt. | ||
File: ClustImpute_description.pdf Graphic file (type pdf) | ||
<use ClustImpute_description.pdf, page 1> | ||
Package pdftex.def Info: ClustImpute_description.pdf , page1 used on input line | ||
9. | ||
(pdftex.def) Requested size: 597.53416pt x 845.08372pt. | ||
File: ClustImpute_description.pdf Graphic file (type pdf) | ||
<use ClustImpute_description.pdf, page 1> | ||
Package pdftex.def Info: ClustImpute_description.pdf , page1 used on input line | ||
9. | ||
(pdftex.def) Requested size: 597.53416pt x 845.08372pt. | ||
File: ClustImpute_description.pdf Graphic file (type pdf) | ||
<use ClustImpute_description.pdf, page 1> | ||
Package pdftex.def Info: ClustImpute_description.pdf , page1 used on input line | ||
9. | ||
(pdftex.def) Requested size: 597.53416pt x 845.08372pt. | ||
[1 | ||
|
||
<./ClustImpute_description.pdf{c:/Users/opfaf/AppData/Roaming/TinyTeX/texmf-va | ||
r/fonts/map/pdftex/updmap/pdftex.map}>] | ||
<ClustImpute_description.pdf, id=91, page=2, 597.50829pt x 845.0471pt> | ||
File: ClustImpute_description.pdf Graphic file (type pdf) | ||
<use ClustImpute_description.pdf, page 2> | ||
Package pdftex.def Info: ClustImpute_description.pdf , page2 used on input line | ||
9. | ||
(pdftex.def) Requested size: 597.53416pt x 845.08372pt. | ||
File: ClustImpute_description.pdf Graphic file (type pdf) | ||
<use ClustImpute_description.pdf, page 2> | ||
Package pdftex.def Info: ClustImpute_description.pdf , page2 used on input line | ||
9. | ||
(pdftex.def) Requested size: 597.53416pt x 845.08372pt. | ||
File: ClustImpute_description.pdf Graphic file (type pdf) | ||
<use ClustImpute_description.pdf, page 2> | ||
Package pdftex.def Info: ClustImpute_description.pdf , page2 used on input line | ||
9. | ||
(pdftex.def) Requested size: 597.53416pt x 845.08372pt. | ||
[2 <./ClustImpute_description.pdf>] (./description_of_algorithm.aux) ) | ||
Here is how much of TeX's memory you used: | ||
3315 strings out of 481331 | ||
51757 string characters out of 5916229 | ||
322778 words of memory out of 5000000 | ||
20133 multiletter control sequences out of 15000+600000 | ||
405688 words of font info for 29 fonts, out of 8000000 for 9000 | ||
14 hyphenation exceptions out of 8191 | ||
80i,17n,85p,260b,436s stack positions out of 5000i,500n,10000p,200000b,80000s | ||
<c:/User | ||
s/opfaf/AppData/Roaming/TinyTeX/texmf-dist/fonts/type1/public/amsfonts/cm/cmbx1 | ||
0.pfb><c:/Users/opfaf/AppData/Roaming/TinyTeX/texmf-dist/fonts/type1/public/ams | ||
fonts/cm/cmcsc10.pfb><c:/Users/opfaf/AppData/Roaming/TinyTeX/texmf-dist/fonts/t | ||
ype1/public/amsfonts/cm/cmr10.pfb><c:/Users/opfaf/AppData/Roaming/TinyTeX/texmf | ||
-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb><c:/Users/opfaf/AppData/Roaming/T | ||
inyTeX/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb><c:/Users/opfaf/AppDa | ||
ta/Roaming/TinyTeX/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb><c:/Use | ||
rs/opfaf/AppData/Roaming/TinyTeX/texmf-dist/fonts/type1/public/lm/lmex10.pfb><c | ||
:/Users/opfaf/AppData/Roaming/TinyTeX/texmf-dist/fonts/type1/public/lm/lmmi10.p | ||
fb><c:/Users/opfaf/AppData/Roaming/TinyTeX/texmf-dist/fonts/type1/public/lm/lmm | ||
i5.pfb><c:/Users/opfaf/AppData/Roaming/TinyTeX/texmf-dist/fonts/type1/public/lm | ||
/lmmi7.pfb><c:/Users/opfaf/AppData/Roaming/TinyTeX/texmf-dist/fonts/type1/publi | ||
c/lm/lmr10.pfb><c:/Users/opfaf/AppData/Roaming/TinyTeX/texmf-dist/fonts/type1/p | ||
ublic/lm/lmr5.pfb><c:/Users/opfaf/AppData/Roaming/TinyTeX/texmf-dist/fonts/type | ||
1/public/lm/lmr7.pfb><c:/Users/opfaf/AppData/Roaming/TinyTeX/texmf-dist/fonts/t | ||
ype1/public/lm/lmsy10.pfb><c:/Users/opfaf/AppData/Roaming/TinyTeX/texmf-dist/fo | ||
nts/type1/public/lm/lmsy5.pfb><c:/Users/opfaf/AppData/Roaming/TinyTeX/texmf-dis | ||
t/fonts/type1/public/lm/lmsy7.pfb> | ||
Output written on description_of_algorithm.pdf (2 pages, 183517 bytes). | ||
PDF statistics: | ||
118 PDF objects out of 1000 (max. 8388607) | ||
90 compressed objects within 1 object stream | ||
0 named destinations out of 1000 (max. 500000) | ||
30 words of extra memory for PDF output out of 10000 (max. 10000000) | ||
|
Binary file not shown.
Binary file not shown.
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,10 @@ | ||
%\VignetteIndexEntry{Description of the algorithm} | ||
%\VignetteAuthor{Oliver Pfaffel} | ||
|
||
\documentclass{article} | ||
\usepackage{pdfpages} | ||
\usepackage{Sweave} | ||
\begin{document} | ||
\input{description_of_algorithm-concordance} | ||
\includepdf[pages=-, fitpaper=true]{ClustImpute_description.pdf} | ||
\end{document} |