DESCRIPTION

Package: tfpscanner
Type: Package
Title: Transmission fitness polymorphism scanner 
Version: 0.0.10
Date: 2021-11-27
Author: Erik Volz, Olivia Boyd
Maintainer: Erik Volz <e.volz@imperial.ac.uk>
Description: A pipeline for scanning a SARS-CoV-2 phylogeny for clades with outlying growth patterns and high evolutionary rates. Original methods developed in emvolz-phylodynamics/variantAnalysis
Depends: ape,lubridate,mgcv,glue,ggplot2,ggtree,ggiraph,scales,phangorn,knitr,stringr,htmlwidgets,dplyr
Suggests: mlesky,treedater,foreach,doMPI
License: MIT
RoxygenNote: 7.0.2