Feature: Migrate to ruby 3.2 (#32)

* add option to run import metadata graphs using docker for testing

* add virtuoso custom scripts

* simplify compare count to not do the benchmarks

* add benchmarking tests

* update virtuoso docker image

* add benchmarks examples documentation

* a method no more eixstent in ruby 3

* migrate to minitest and activesupport 5

* run the CI tests using 3.2 instead of 2.7

.github/workflows/ruby-unit-tests.yml

@@ -9,8 +9,8 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        goo-slice: [ '20', '100', '500' ]
-        ruby-version: [ '2.7' ]
+        goo-slice: [ '100' ]
+        ruby-version: [ '3.2.0' ]
         triplestore: [ 'fs', 'ag', 'vo', 'gb' ]
     runs-on: ubuntu-latest
     steps:
@@ -34,7 +34,7 @@ jobs:
         # http://docs.codecov.io/docs/testing-with-docker
         run: |
           ci_env=`bash <(curl -s https://codecov.io/env)`
-          GOO_SLICES=${{ matrix.goo-slice }} bundle exec rake test:docker:${{ matrix.triplestore }} TESTOPTS="-v"
+          GOO_SLICES=${{ matrix.goo-slice }} bundle exec rake test:docker:${{ matrix.triplestore }}
       - name: Upload coverage reports to Codecov
         uses: codecov/codecov-action@v3
         with:

.gitignore

@@ -37,4 +37,3 @@ processed_files/
 queries.txt
 
 graph_comparison.csv
-

Capfile

@@ -27,12 +27,14 @@ install_plugin Capistrano::SCM::Git
 #   https://github.com/capistrano/passenger
 #
 # require "capistrano/rvm"
-# require "capistrano/rbenv"
+require "capistrano/rbenv"
 # require "capistrano/chruby"
-# require "capistrano/bundler"
+require "capistrano/bundler"
 # require "capistrano/rails/assets"
 # require "capistrano/rails/migrations"
 # require "capistrano/passenger"
+require 'capistrano/locally'
+#require 'new_relic/recipes' # announce deployments in NewRelic
 
 # Load custom tasks from `lib/capistrano/tasks` if you have any defined
 Dir.glob("lib/capistrano/tasks/*.rake").each { |r| import r }

Gemfile

@@ -22,23 +22,27 @@ gem 'sys-proctable'
 gem 'request_store'
 gem 'parallel'
 gem 'json-ld'
-gem 'ffi', '~> 1.16.3'
-gem 'activesupport', '~> 3.2.22.5'
+gem 'ffi'
+gem 'activesupport', '~> 5.0'
+gem 'rackup'
 
-# Monitoring
-gem 'cube-ruby', require: 'cube'
 
-gem 'goo', github: 'ontoportal-lirmm/goo', branch: 'development'
+gem 'goo', github: 'ontoportal-lirmm/goo', branch: 'feature/migrate-ruby-3.2'
+gem 'ontologies_linked_data', github: 'ontoportal-lirmm/ontologies_linked_data', branch: 'feature/migrate-ruby-3.2'
 gem 'sparql-client', github: 'ontoportal-lirmm/sparql-client', branch: 'development'
-gem 'ontologies_linked_data', github: 'ontoportal-lirmm/ontologies_linked_data', branch: 'development'
 gem 'ncbo_annotator', github: 'ontoportal-lirmm/ncbo_annotator', branch: 'development'
+
 # Testing
 group :test do
   gem 'email_spec'
-  gem 'minitest', '< 5.0'
+  gem 'minitest'
   gem 'simplecov'
   gem 'simplecov-cobertura' # for codecov.io
-  gem 'test-unit-minitest'
+  # gem 'test-unit-minitest'
+  gem 'crack', '0.4.5'
+  gem 'webmock'
+  gem "minitest-hooks", "~> 1.5"
+  gem 'webrick'
 end
 
 group :development do
@@ -51,6 +55,8 @@ group :development do
   gem 'ed25519', '>= 1.2', '< 2.0', require: false
 end
 
+gem 'cube-ruby'
 gem "binding_of_caller", "~> 1.0"
+gem 'concurrent-ruby', '1.3.4'
 gem 'net-smtp'
 gem 'net-ftp'