Compile models for queries (#20)

* build compiled models

* add ontologies

* queries refer to compiled models. add link to cmpiled model too

* add deps

* include java for topquadrant shacl

* remove unneeded files

* more visibility

* find onntology

* get curdir

* use correct 223p file

* update 223p.ttl

* shorter compile times, fix query formatting?

* prioritize compiled model

* fixing links

.github/workflows/book.yml

@@ -28,6 +28,12 @@ jobs:
       run: |
         pip install -r requirements.txt
 
+    - name: Set up Java
+      uses: actions/setup-java@v4
+      with:
+        distribution: 'temurin'
+        java-version: '17'
+
     - name: build examples
       run: |
         bash build_examples.sh

Makefile

@@ -0,0 +1,28 @@
+.PHONY: all environment compile-models clean refresh-ontoenv
+
+# Assuming 'all' should build everything. If 'environment' is a task that should be run,
+# you need to add a corresponding recipe for it.
+all: refresh-ontoenv compile-models
+
+# MODEL_SOURCES will find all .ttl files in the models directory.
+MODEL_SOURCES := $(wildcard models/*.ttl)
+
+# COMPILED_MODELS will be the list of files but in the models/compiled folder.
+COMPILED_MODELS := $(patsubst models/%.ttl,models/compiled/%.ttl,$(MODEL_SOURCES))
+
+refresh-ontoenv:
+	ontoenv init -s ontologies/ -v
+
+# Rule to compile each model.
+# The prerequisite 'models/%.ttl' means it will match each .ttl file in the models directory.
+# 'tools/compile.py' ensures the compile script is present, but should be a prerequisite only if you want to track changes on it.
+# 'ontologies/*.ttl' captures changes in any .ttl file in the ontologies directory.
+models/compiled/%.ttl: models/%.ttl tools/compile.py
+	python tools/compile.py -r -i -o $@ $< ontologies/223p.ttl
+
+# The compile-models target will "make" all of the COMPILED_MODELS.
+compile-models: $(COMPILED_MODELS)
+
+# Rule to clean up the compiled models.
+clean:
+	rm -f models/compiled/*.ttl

build_examples.sh

@@ -1,3 +1,6 @@
+#!/bin/bash
+set -x
+
 # run the tools/make_model_formats.py script on the models directory
 python tools/make_model_formats.py models
 
@@ -26,3 +29,7 @@ done
 
 # build queries
 python tools/generate-queries.py
+
+# for each filename in the models/ directory, run tools/compile.py -o models/compiled/<filename>.ttl
+mkdir -p models/compiled
+make compile-models