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v0.6.0

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@nvictus nvictus released this 07 Nov 21:02
· 39 commits to master since this release
1b897c4

New features

  • New function/tool rearrange_cooler to reorder/subset/flip regions of the genome in a cooler
  • New test dataset for micro-C from hESCs

API changes

  • snipping: reorder the axes of the output snipper array to (snippet_idx, i, j).

Maintenance

  • snipping: fix spurious nan->0 conversion of bad bins in on-diagonal pileups
  • snipping: fix snipping without provided view
  • snipping: fix for storing the stack in a file
  • virtual4c: fix for the case when viewpoint has no contacts
  • fix: Fix numba deprecation warnings by adding nopython=True
  • Other small bugfixes