CellBase Develop workflow

lib: add PGS data for variant annotation, #TASK-5411, #TASK-5387 #330

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Triggered via push January 3, 2024 15:25

jtarraga

TASK-5387

Status Failure

Total duration 8m 21s

Artifacts 1

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task.yml

on: push

build / Build Java app

test / Test and push Sonar analysis

deploy-docker / Push Docker image

Annotations

8 errors

VariantAnnotationCalculatorTest.testLicensedDataHgmdCosmicApiKeyAnnotation: cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/VariantAnnotationCalculatorTest.java#L2061

org.opencb.cellbase.core.exception.CellBaseException: Data not found in release 1. {}

VariantAnnotationCalculatorTest.testLicensedDataHgmdSpliceAiApiKeyAnnotation: cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/VariantAnnotationCalculatorTest.java#L2088

org.opencb.cellbase.core.exception.CellBaseException: Data not found in release 1. {}

VariantAnnotationCalculatorTest.testLicensedDataCosmicSpliceApiKeyAnnotation: cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/VariantAnnotationCalculatorTest.java#L2115

org.opencb.cellbase.core.exception.CellBaseException: Data not found in release 1. {}

VariantAnnotationCalculatorTest.testLicensedDataSpliceApiKeyAnnotation: cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/VariantAnnotationCalculatorTest.java#L2034

org.opencb.cellbase.core.exception.CellBaseException: Data not found in release 1. {}

VariantAnnotationCalculatorTest.testLicensedDataCosmicApiKeyAnnotation: cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/VariantAnnotationCalculatorTest.java#L2007

org.opencb.cellbase.core.exception.CellBaseException: Data not found in release 1. {}

VariantAnnotationCalculatorTest.testLicensedDataUnisersalApiKeyAnnotation: cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/VariantAnnotationCalculatorTest.java#L1953

org.opencb.cellbase.core.exception.CellBaseException: Data not found in release 1. {}

VariantAnnotationCalculatorTest.testLicensedDataHgmdApiKeyAnnotation: cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/VariantAnnotationCalculatorTest.java#L1980

org.opencb.cellbase.core.exception.CellBaseException: Data not found in release 1. {}

test / Test and push Sonar analysis

There were 7 failed tests

Artifacts

Produced during runtime

Name	Size
build-folder Expired	232 MB