Clean up vignette

- Don't print messages when loading library - Set theme outside of loading libraries - Remove `scale_colour_few()`, only need `scale_fill_few()` - Reformat code - Update logo in website
openplantpathology · Jun 25, 2018 · 3e3ccd1 · 3e3ccd1
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,5 +1,5 @@
 Package: OPP.at.IEW12
-Version: 0.0.7
+Version: 0.0.8
 Title: Open Ideas, Data and Code Sharing: Epidemiologists Should Be in Front!
 Description: Supplementary material for talk at IEW12 delivered by Emerson M 
   Del Ponte.

diff --git a/codemeta.json b/codemeta.json
@@ -10,7 +10,7 @@
   "codeRepository": "https://github.com/adamhsparks/OPP.at.IEW12",
   "issueTracker": "https://github.com/adamhsparks/OPP.at.IEW12/issues",
   "license": "https://spdx.org/licenses/MIT",
-  "version": "0.0.7",
+  "version": "0.0.8",
   "programmingLanguage": {
     "@type": "ComputerLanguage",
     "name": "R",
@@ -81,6 +81,18 @@
       },
       "sameAs": "https://CRAN.R-project.org/package=ggplot2"
     },
+    {
+      "@type": "SoftwareApplication",
+      "identifier": "ggthemes",
+      "name": "ggthemes",
+      "provider": {
+        "@id": "https://cran.r-project.org",
+        "@type": "Organization",
+        "name": "Comprehensive R Archive Network (CRAN)",
+        "url": "https://cran.r-project.org"
+      },
+      "sameAs": "https://CRAN.R-project.org/package=ggthemes"
+    },
     {
       "@type": "SoftwareApplication",
       "identifier": "gsheet",
@@ -155,7 +167,7 @@
     }
   ],
   "readme": "https://github.com/openplantpathology/OPP.at.IEW12/blob/master/README.md",
-  "fileSize": "33.127KB",
+  "fileSize": "38.093KB",
   "contIntegration": [
     "https://travis-ci.org/openplantpathology/OPP.at.IEW12",
     "https://ci.appveyor.com/project/adamhsparks/opp-at-iew12/branch/master"

diff --git a/docs/CONDUCT.html b/docs/CONDUCT.html
diff --git a/docs/CONTRIBUTING.html b/docs/CONTRIBUTING.html
diff --git a/docs/LICENSE-text.html b/docs/LICENSE-text.html
diff --git a/docs/LICENSE.html b/docs/LICENSE.html
diff --git a/docs/articles/IEW12_slides.html b/docs/articles/IEW12_slides.html
diff --git a/docs/articles/IEW12_slides_files/figure-html/unnamed-chunk-1-1.png b/docs/articles/IEW12_slides_files/figure-html/unnamed-chunk-1-1.png
diff --git a/docs/articles/IEW12_slides_files/figure-html/unnamed-chunk-2-1.png b/docs/articles/IEW12_slides_files/figure-html/unnamed-chunk-2-1.png
diff --git a/docs/articles/IEW12_slides_files/figure-html/unnamed-chunk-3-1.png b/docs/articles/IEW12_slides_files/figure-html/unnamed-chunk-3-1.png
diff --git a/docs/articles/IEW12_slides_files/figure-html/unnamed-chunk-4-1.png b/docs/articles/IEW12_slides_files/figure-html/unnamed-chunk-4-1.png
diff --git a/docs/articles/IEW12_slides_files/figure-html/unnamed-chunk-5-1.png b/docs/articles/IEW12_slides_files/figure-html/unnamed-chunk-5-1.png
diff --git a/docs/articles/IEW12_slides_files/figure-html/unnamed-chunk-6-1.png b/docs/articles/IEW12_slides_files/figure-html/unnamed-chunk-6-1.png
diff --git a/docs/articles/IEW12_slides_files/figure-html/unnamed-chunk-8-1.png b/docs/articles/IEW12_slides_files/figure-html/unnamed-chunk-8-1.png
diff --git a/docs/articles/index.html b/docs/articles/index.html
diff --git a/docs/authors.html b/docs/authors.html
diff --git a/docs/favicon.ico b/docs/favicon.ico
diff --git a/docs/index.html b/docs/index.html
diff --git a/docs/logo.png b/docs/logo.png
diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml
@@ -1,4 +1,4 @@
-pandoc: 1.19.2.1
+pandoc: 2.2.1
 pkgdown: 1.1.0
 pkgdown_sha: ~
 articles:

diff --git a/docs/reference/OPP.at.IEW2018.html b/docs/reference/OPP.at.IEW2018.html
diff --git a/docs/reference/figures/logo.png b/docs/reference/figures/logo.png
diff --git a/docs/reference/index.html b/docs/reference/index.html