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minor edits
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Peter Causey-Freeman committed Apr 28, 2022
1 parent 1ab6c10 commit 4bed18f
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2 changes: 2 additions & 0 deletions VariantFormatter/variantformatter.py
Original file line number Diff line number Diff line change
Expand Up @@ -66,6 +66,8 @@ def __init__(self, p_vcf, g_hgvs, un_norm_hgvs, hgvs_ref_bases, gen_error, genom
try:
if ("NC_012920.1" in str(g_hgvs)) and "hg19" in genome_build:
gen_error = "NC_012920.1 is not associated with genome build hg19, instead use genome build GRCh37"
elif ("NC_001807.4" in str(g_hgvs)) and "GRCh37" in genome_build:
gen_error = "NC_001807.4 is not associated with genome build GRCh37, instead use genome build hg19"
except TypeError:
pass

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