Docker installation updates

[scottstanie]

and a fix on the PSD Doc. ID

Details on the environment differences by removing cxx-compiler (we're not going to run whirlwind in production yet), xarray, pyaps (troposphere moved elsewhere)

$ wc -l spec-new docker/specfile.txt
  237 spec-new
  315 docker/specfile.txt

./docker/create-lockfile.sh --file conda-env.yml  > spec-new
diff <(grep '^https' docker/specfile.txt | sed 's/#.*//; s/.*\/\([^-]*\)-\([^-]*\).*/\1-\2/' | sort) <(grep '^https' spec-new | sed 's/#.*//; s/.*\/\([^-]*\)-\([^-]*\).*/\1-\2/' | sort) | grep '^[<>]' | sed 's/^< /Old: /; s/^> /New: /'

Old: attrs-24.2.0
New: attrs-24.3.0
Old: binutils-2.43
Old: binutils_impl_linux-64
Old: binutils_linux-64
Old: bokeh-3.6.0
New: bokeh-3.6.2
Old: cads-api
Old: cairo-1.18.0
Old: c-compiler
Old: cdsapi-0.7.4
Old: certifi-2024.8.30
New: certifi-2024.12.14
Old: cfitsio-4.4.1
Old: click-8.1.7
New: click-8.1.8
Old: cloudpickle-3.1.0
New: cloudpickle-3.1.1
Old: contourpy-1.3.0
Old: cxx-compiler
New: contourpy-1.3.1
Old: cyrus-sasl
Old: cytoolz-1.0.0
Old: dask-2024.10.0
New: cytoolz-1.0.1
New: dask-2024.12.1
Old: distributed-2024.10.0
Old: dolphin-0.30
Old: eccodes-2.38.3
New: distributed-2024.12.1
New: dolphin-0.35.1
Old: fmt-11.0.2
Old: fontconfig-2.15.0
Old: fonts-conda
Old: fonts-conda
Old: fonttools-4.54.1
Old: font-ttf
Old: font-ttf
Old: font-ttf
Old: font-ttf
Old: freeglut-3.2.2
New: fonttools-4.55.3
Old: fsspec-2024.10.0
Old: gcc-13.3.0
Old: gcc_impl_linux-64
Old: gcc_linux-64
New: fsspec-2024.12.0
Old: git-2.47.0
New: git-2.47.1
Old: gxx-13.3.0
Old: gxx_impl_linux-64
Old: gxx_linux-64
Old: h5netcdf-1.4.0
New: h5netcdf-1.4.1
Old: hdf4-4.2.15
Old: importlib_metadata-8.5.0
Old: isce3-0.23.0
New: isce3-0.24.1
Old: jasper-4.2.4
Old: jax-0.4.34
Old: jaxlib-0.4.34
Old: jinja2-3.1.4
New: jax-0.4.35
New: jaxlib-0.4.35
New: jinja2-3.1.5
Old: kealib-1.5.3
Old: kernel-headers_linux
Old: kiwisolver-1.4.7
New: kiwisolver-1.4.8
Old: libarchive-3.7.4
Old: libarrow-18.0.0
New: libarchive-3.7.7
New: libarrow-18.1.0
Old: libcurl-8.10.1
Old: libdeflate-1.22
Old: libedit-3.1.20191231
New: libcurl-8.11.1
New: libdeflate-1.23
New: libedit-3.1.20240808
Old: libexpat-2.6.3
New: libexpat-2.6.4
Old: libgcc-devel_linux
Old: libgdal-3.9.3
Old: libgdal-fits
Old: libgdal-grib
Old: libgdal-hdf4
Old: libgdal-hdf5
Old: libgdal-jp2openjpeg
Old: libgdal-kea
Old: libgdal-netcdf
Old: libgdal-pdf
Old: libgdal-pg
Old: libgdal-postgisraster
Old: libgdal-tiledb
Old: libgdal-xls
Old: libglib-2.82.2
Old: libglu-9.0.0
Old: libgrpc-1.65.5
New: libgrpc-1.67.1
Old: libnetcdf-4.9.2
New: liblzma-5.6.3
Old: libntlm-1.4
Old: libparquet-18.0.0
Old: libpng-1.6.44
Old: libpq-17.0
Old: libprotobuf-5.27.5
New: libparquet-18.1.0
New: libpng-1.6.45
New: libprotobuf-5.28.3
Old: libsanitizer-13.3.0
Old: libsqlite-3.47.0
Old: libssh2-1.11.0
New: libsqlite-3.47.2
New: libssh2-1.11.1
Old: libstdcxx-devel_linux
Old: libutf8proc-2.8.0
New: libutf8proc-2.9.0
Old: libxml2-2.13.4
Old: libxslt-1.1.39
Old: libzip-1.11.2
New: libxml2-2.13.5
Old: ml_dtypes-0.5.0
New: ml_dtypes-0.5.1
Old: multiurl-0.3.2
Old: nspr-4.36
Old: nss-3.106
Old: openjpeg-2.5.2
Old: openldap-2.6.8
New: openjpeg-2.5.3
Old: openssl-3.3.2
New: openssl-3.4.0
Old: orc-2.0.2
Old: packaging-24.1
New: orc-2.0.3
New: packaging-24.2
Old: pillow-11.0.0
New: pillow-11.1.0
Old: pixman-0.43.2
Old: poppler-24.08.0
Old: poppler-data
Old: postgresql-17.0
Old: proj-9.5.0
Old: psutil-6.1.0
New: proj-9.5.1
New: psutil-6.1.1
Old: pyaps3-0.3.5
Old: pyarrow-18.0.0
New: pyarrow-18.1.0
Old: pydantic-2.9.2
New: pydantic-2.10.5
Old: pygrib-2.1.6
Old: pyparsing-3.2.0
New: pyparsing-3.2.1
Old: python-3.12.7
New: python-3.12.8
Old: ruamel.yaml-0.18.6
New: ruamel.yaml-0.18.10
Old: s2n-1.5.6
Old: scipy-1.14.1
Old: setuptools-75.3.0
New: s2n-1.5.10
New: scipy-1.15.1
New: setuptools-75.8.0
Old: six-1.16.0
New: six-1.17.0
Old: spdlog-1.14.1
Old: sqlite-3.47.0
Old: sysroot_linux-64
New: sqlite-3.47.2
Old: tiledb-2.26.2
Old: tornado-6.4.1
Old: tqdm-4.66.6
New: tornado-6.4.2
New: tqdm-4.67.1
Old: tzcode-2024b
Old: unicodedata2-15.1.0
New: unicodedata2-16.0.0
Old: urllib3-2.2.3
Old: wheel-0.44.0
Old: xarray-2024.10.0
New: urllib3-2.3.0
New: wheel-0.45.1
Old: xorg-libice
Old: xorg-libsm
Old: xorg-libx11
Old: xorg-libxext
Old: xorg-libxfixes
Old: xorg-libxi
Old: xorg-libxrender
Old: xorg-xextproto
Old: xorg-xorgproto
Old: xz-5.2.6
Old: yamale-5.2.1
New: yamale-5.3.0
Old: zipp-3.20.2
New: zipp-3.21.0