Merge branch 'main' into tranquilo-paper

.pre-commit-config.yaml

@@ -6,7 +6,7 @@ repos:
       - id: check-useless-excludes
         # - id: identity  # Prints all files passed to pre-commits. Debugging.
   - repo: https://github.com/lyz-code/yamlfix
-    rev: 1.13.0
+    rev: 1.16.0
     hooks:
       - id: yamlfix
         exclude: tests/optimization/fixtures
@@ -19,7 +19,7 @@ repos:
         always_run: true
         require_serial: true
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.4.0
+    rev: v4.5.0
     hooks:
       - id: check-added-large-files
         args:
@@ -52,17 +52,17 @@ repos:
       - id: check-docstring-first
         exclude: src/estimagic/optimization/algo_options.py
   - repo: https://github.com/adrienverge/yamllint.git
-    rev: v1.32.0
+    rev: v1.33.0
     hooks:
       - id: yamllint
         exclude: tests/optimization/fixtures
   - repo: https://github.com/psf/black
-    rev: 23.7.0
+    rev: 23.11.0
     hooks:
       - id: black
         language_version: python3.10
   - repo: https://github.com/asottile/blacken-docs
-    rev: 1.15.0
+    rev: 1.16.0
     hooks:
       - id: blacken-docs
         exclude: docs/source/how_to_guides/optimization/how_to_specify_constraints.md
@@ -79,16 +79,16 @@ repos:
           - --blank
         exclude: src/estimagic/optimization/algo_options.py
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.0.282
+    rev: v0.1.6
     hooks:
       - id: ruff
   - repo: https://github.com/nbQA-dev/nbQA
-    rev: 1.7.0
+    rev: 1.7.1
     hooks:
       - id: nbqa-black
       - id: nbqa-ruff
   - repo: https://github.com/executablebooks/mdformat
-    rev: 0.7.16
+    rev: 0.7.17
     hooks:
       - id: mdformat
         additional_dependencies:
@@ -99,7 +99,7 @@ repos:
           - '88'
         files: (README\.md)
   - repo: https://github.com/executablebooks/mdformat
-    rev: 0.7.16
+    rev: 0.7.17
     hooks:
       - id: mdformat
         additional_dependencies:
@@ -110,7 +110,7 @@ repos:
           - '88'
         files: (docs/.)
   - repo: https://github.com/asottile/setup-cfg-fmt
-    rev: v2.4.0
+    rev: v2.5.0
     hooks:
       - id: setup-cfg-fmt
   - repo: https://github.com/mgedmin/check-manifest

src/estimagic/visualization/estimation_table.py

@@ -1237,11 +1237,12 @@ def _generate_notes_latex(
             amp_n = "&" * n_levels
             if isinstance(custom_notes, list):
                 if not all(isinstance(n, str) for n in custom_notes):
+                    not_str_notes = [n for n in custom_notes if not isinstance(n, str)]
+                    not_str_notes_types = [type(n) for n in not_str_notes]
                     raise ValueError(
                         f"""Each custom note can only be of string type.
                         The following notes:
-                        {[n for n in custom_notes if type(n) != str]} are of types
-                        {[type(n) for n in custom_notes if type(n) != str]}
+                        {not_str_notes} are of types {not_str_notes_types}
                         respectively."""
                     )
                 for n in custom_notes:
@@ -1297,11 +1298,12 @@ def _generate_notes_html(
         if custom_notes:
             if isinstance(custom_notes, list):
                 if not all(isinstance(n, str) for n in custom_notes):
+                    not_str_notes = [n for n in custom_notes if not isinstance(n, str)]
+                    not_str_notes_types = [type(n) for n in not_str_notes]
                     raise ValueError(
                         f"""Each custom note can only be of string type.
                         The following notes:
-                        {[n for n in custom_notes if type(n) != str]} are of types
-                        {[type(n) for n in custom_notes if type(n) != str]}
+                        {not_str_notes} are of types {not_str_notes_types}
                         respectively."""
                     )
                 notes_text += """

tests/optimization/test_many_algorithms.py

@@ -60,7 +60,8 @@ def test_algorithm_on_sum_of_squares_with_binding_bounds(algorithm):
         skip_checks=True,
     )
     assert res.success in [True, None]
-    aaae(res.params, np.array([1, 0, -1]), decimal=3)
+    decimal = 2 if algorithm == "simopt_astrodf" else 3
+    aaae(res.params, np.array([1, 0, -1]), decimal=decimal)
 
 
 skip_msg = (

tests/optimization/test_pounders_integration.py

@@ -1,4 +1,6 @@
 """Test suite for the internal pounders interface."""
+import sys
+
 from functools import partial
 from itertools import product
 
@@ -78,7 +80,7 @@ def trustregion_subproblem_options():
     return out
 
 
-start_vec = [np.array([0.15, 0.008, 0.01])]
+start_vec = [np.array([0.15, 0.008, 0.01], dtype=np.float64)]
 cg_routine = ["cg", "steihaug_toint", "trsbox"]
 universal_tests = list(product(start_vec, cg_routine))
 specific_tests = [
@@ -88,6 +90,7 @@ def trustregion_subproblem_options():
 TEST_CASES = universal_tests + specific_tests
 
 
+@pytest.mark.skipif(sys.platform == "win32", reason="Not accurate on Windows.")
 @pytest.mark.parametrize("start_vec, conjugate_gradient_method_sub", TEST_CASES)
 def test_bntr(
     start_vec,