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    33 repositories

    • BIGapp

      Public
      The BIG app is a user-friendly R Shiny app to analyze genomic data without needing to use command-line tools and works across different species ploidy.
      dartbioinformaticsgenomicsbreedingshiny-apps
      R
      •
      Apache License 2.0
      •3•2•1•1•Updated Dec 28, 2024Dec 28, 2024

    • BIGr

      Public
      This R package contains the functions developed within Breeding Insight to analyze diploid and polyploid breeding and genetic data
      R
      •
      Apache License 2.0
      •2•1•0•0•Updated Dec 28, 2024Dec 28, 2024

    • taf

      Public
      Test Automation Framework
      JavaScript
      •
      Apache License 2.0
      •0•0•0•3•Updated Dec 28, 2024Dec 28, 2024

    • bi-api

      Public
      Java
      •
      Apache License 2.0
      •1•8•0•17•Updated Dec 23, 2024Dec 23, 2024

    • bi-docker-stack

      Public
      Shell
      •0•3•0•1•Updated Dec 21, 2024Dec 21, 2024

    • brapi-Java-TestServer

      Public
      BrAPI Java Spring-Boot Test Server
      Java
      •
      MIT License
      •8•0•0•2•Updated Dec 20, 2024Dec 20, 2024

    • bi-web

      Public
      TypeScript
      •
      Apache License 2.0
      •1•7•0•22•Updated Dec 20, 2024Dec 20, 2024

    • count_trout_eggs

      Public
      YOLOV8 (Roboflow 3.0) pipeline for counting and classifying trout eggs.
      Jupyter Notebook
      •0•0•0•0•Updated Dec 19, 2024Dec 19, 2024

    • tablesaw

      Public
      Java dataframe and visualization library
      Java
      •
      Apache License 2.0
      •644•0•0•1•Updated Dec 5, 2024Dec 5, 2024

    • brapi

      Public
      A java project with modules to interact with BrAPI data.
      Java
      •
      Apache License 2.0
      •1•3•2•4•Updated Nov 19, 2024Nov 19, 2024

    • QR_generator

      Public
      Python code that generates QR codes from a list in a .txt file and prints them out in a docx
      Python
      •1•0•0•0•Updated Nov 12, 2024Nov 12, 2024

    • BrAPI-Graphical-Filtering

      Public
      Tool for filtering BrAPI ObservationUnits and Germplasm by Observation values
      JavaScript
      •4•0•0•0•Updated Oct 17, 2024Oct 17, 2024

    • BrAPI-js

      Public
      JavaScript BrAPI Client with support for asynchronous interdependent calls.
      JavaScript
      •3•0•0•3•Updated Oct 14, 2024Oct 14, 2024

    • BerryPortraits

      Public
      BerryPortraits cranberry analysis tool
      Python
      •
      Apache License 2.0
      •0•1•0•0•Updated Oct 10, 2024Oct 10, 2024

    • sgn

      Public
      The code behind the Sol Genomics Network, Cassavabase and BreeDBase websites
      breedbase
      PLpgSQL
      •
      MIT License
      •36•2•3•3•Updated Aug 19, 2024Aug 19, 2024

    • breedbase_dockerfile

      Public
      The Dockerfiles for breeDBase
      breedbase
      Dockerfile
      •
      MIT License
      •8•0•0•1•Updated Aug 14, 2024Aug 14, 2024

    • Gigwa2

      Public
      JavaScript
      •
      GNU Affero General Public License v3.0
      •8•0•0•1•Updated Jul 25, 2024Jul 25, 2024

    • Mgdb2BrapiV2Impl

      Public
      Java
      •1•0•0•0•Updated Apr 10, 2024Apr 10, 2024

    • BrAPI-Manuscript2

      Public
      HTML
      •
      Creative Commons Attribution 4.0 International
      •24•0•0•0•Updated Feb 27, 2024Feb 27, 2024

    • Blueberry_DArTag_Panel_paper

      Public
      This repository contains the scripts used to generate Draper X Jewel genetic maps for Blueberry panel paper
      R
      •0•0•0•0•Updated Feb 9, 2024Feb 9, 2024

    • MrBeanApp

      Public
      Web application
      R
      •
      Other
      •19•0•0•1•Updated Feb 5, 2024Feb 5, 2024

    • curl

      Public
      A Modern and Flexible Web Client for R
      C
      •
      Other
      •70•0•0•0•Updated Jan 28, 2024Jan 28, 2024

    • QBMS

      Public
      R package to query Breeding Management System (BMS) database
      R
      •
      GNU General Public License v3.0
      •5•0•0•0•Updated Jan 9, 2024Jan 9, 2024

    • gigwa-pom

      Public
      0•0•0•0•Updated Dec 7, 2023Dec 7, 2023

    • bi-jooq-codegen

      Public
      An extension of Jooq's codegen library (https://github.com/jOOQ/jOOQ/tree/master/jOOQ-codegen)
      Java
      •
      Apache License 2.0
      •1•0•0•1•Updated Dec 5, 2023Dec 5, 2023

    • BrAPI-Pedigree-Viewer

      Public
      JavaScript
      •4•0•0•1•Updated Nov 9, 2023Nov 9, 2023

    • alfalfa_dartag_panel_paper

      Public
      Code used to generate genetic maps from an F1 and a backcross populations from alfalfa
      R
      •0•0•0•0•Updated Sep 11, 2023Sep 11, 2023

    • Field-Book-iOS

      Public
      Swift
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 24, 2023Mar 24, 2023

    • brapi-phenotype-qc

      Public
      BrAPI Phenotype QC tool
      Python
      •
      Apache License 2.0
      •1•1•0•0•Updated Mar 21, 2023Mar 21, 2023

    • brapir-v2

      Public
      Breeding API v2 (BrAPI v2) implementation in R to access BrAPI v2 compliant Databases
      R
      •
      GNU General Public License v3.0
      •3•0•0•0•Updated Apr 15, 2022Apr 15, 2022