Lincoln Stein Lab

All

9 repositories

oncoGAN
Public
A pipeline that accurately simulates high quality publicly cancer genomes (VCFs).
Python
•
MIT License
•0•8•0•0•Updated Dec 2, 2024Dec 2, 2024
JournalClubAssistant
Public
Python
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MIT License
•0•0•0•0•Updated Nov 19, 2024Nov 19, 2024
jbrowse-config-assistant-bot
Public
Python
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Apache License 2.0
•0•0•7•2•Updated Nov 15, 2024Nov 15, 2024
MMDRP
Public
Drug Response Prediction and Biomarker Discovery Using Multi-Modal Deep Learning
R
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MIT License
•1•11•0•0•Updated Apr 24, 2024Apr 24, 2024
jbrowse-plugin-overture
Public
JBrowse 2 plugin for connection to Overture instance resources.
TypeScript
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Apache License 2.0
•0•0•0•0•Updated May 31, 2023May 31, 2023
jbrowse-plugin-isoform-inspector
Public
JBrowse plugin that provides a new view for the Isoform Inspector for visualizing cohort RNA-seq data
TypeScript
•
Apache License 2.0
•0•0•0•0•Updated May 8, 2023May 8, 2023
gdc-viewer
Public
A JBrowse plugin for viewing GDC Data
plugin cancer genome-browser gdc-portal gdc jbrowse jbrowse-plugin
JavaScript
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MIT License
•2•3•21•5•Updated Mar 4, 2023Mar 4, 2023
icgc-viewer
Public
A JBrowse plugin for viewing ICGC Data
plugin cancer genome-browser jbrowse jbrowse-plugin icgc icgc-portal
JavaScript
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MIT License
•3•2•10•5•Updated Mar 4, 2023Mar 4, 2023
jbrowse-plugin-desktop-tools
Public
A plugin that can run command line tools to prepare data for JBrowse 2.
TypeScript
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Apache License 2.0
•0•0•0•0•Updated Sep 29, 2022Sep 29, 2022