Repositories list

• CAP2

  Public
  Python

  •

  MIT License

  •6•13•8•4•Updated Oct 3, 2023Oct 3, 2023

• metasub_utils

  Public
  Python

  •

  MIT License

  •1•8•2•1•Updated Dec 26, 2022Dec 26, 2022

• main_paper_figures

  Public
  Code used to generate figures for the MetaSUB Main Paper Released August 2019

  Jupyter Notebook

  •2•3•2•0•Updated Oct 5, 2021Oct 5, 2021

• MetaSUB_CAP

  Public
  A comprehensive pipeline for short read metagenomic data

  bioinformaticspipelinemetagenomics+ 2bioinformatics-pipelinemicrobiome

  Python

  •

  MIT License

  •11•24•7•1•Updated Aug 25, 2020Aug 25, 2020

• MetaSUB-metadata

  Public
  Python

  •4•5•0•1•Updated Feb 22, 2020Feb 22, 2020

• bioinformatics_management

  Public
  0•3•1•0•Updated Aug 26, 2019Aug 26, 2019

• MetaSUB_assembly_CAP

  Public
  Python

  •

  MIT License

  •0•1•1•0•Updated May 27, 2019May 27, 2019

• MetaSUB_QC_Pipeline

  Public
  Python

  •

  MIT License

  •0•1•0•0•Updated Jan 17, 2019Jan 17, 2019

• metasub-scripts

  Public
  Python

  •

  MIT License

  •0•0•0•0•Updated Apr 10, 2018Apr 10, 2018

• kobo-metadata-cleanup

  Public
  Cleanup of the metadata collected with KoboToolBox during gCSD2017

  GNU General Public License v3.0

  •0•0•0•0•Updated Nov 2, 2017Nov 2, 2017