Repositories list

• clips

  Public
  Python

  •

  GNU General Public License v2.0

  •0•0•0•0•Updated Oct 27, 2018Oct 27, 2018

• iSkyLIMS

  Public
  is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management.

  Python

  •

  GNU General Public License v3.0

  •36•0•0•0•Updated Oct 3, 2018Oct 3, 2018

• appliedgenomics2018

  Public
  Materials for Spring 2018 Applied Genomics Course

  Jupyter Notebook

  •30•0•0•0•Updated May 7, 2018May 7, 2018

• Vitaprint_hardware

  Public
  This repository contains detailed descriptions of the Vitaprint extruder hardware, components and assembly.

  3•0•0•0•Updated Apr 12, 2018Apr 12, 2018

• SAUCIE

  Public
  Python

  •29•0•0•0•Updated Apr 5, 2018Apr 5, 2018

• bioabminer

  Public
  Biomedical Abbreviation Miner (BioAB Miner)

  Java

  •1•0•0•0•Updated Feb 26, 2018Feb 26, 2018

• AsisTerm

  Public
  Asistente para la anotación y expansión de definiciones de conceptos médicos en español

  PHP

  •

  MIT License

  •1•0•0•0•Updated Feb 26, 2018Feb 26, 2018

• SWAT4LS_2017_Hackathon

  Public
  Supplementary materials for the hackhathon titled "Deep Neural Networks for Analysing Cancer Genomics Data" at 10th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4LS'2017), Rome, Italy, 7th December 2017

  Python

  •1•0•0•0•Updated Dec 6, 2017Dec 6, 2017

• scRNA.seq.course

  Public
  Analysis of single cell RNA-seq data course, Cambridge University, UK

  TeX

  •

  GNU General Public License v3.0

  •1.3k•0•0•0•Updated Oct 27, 2017Oct 27, 2017

• MLML2R

  Public
  Consistent simultaneous estimates of DNA methylation and hydroxymethylation using R

  R

  •

  MIT License

  •2•0•0•0•Updated Oct 12, 2017Oct 12, 2017

• regulatory-prediction

  Public
  Code and Data to accompany "Dilated Convolutions for Modeling Long-Distance Genomic Dependencies", presented at the ICML 2017 Workshop on Computational Biology

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •13•0•0•0•Updated Oct 3, 2017Oct 3, 2017

• DeepCC

  Public
  a deep learning-based framework for cancer classification

  R

  •

  MIT License

  •17•0•0•0•Updated Aug 27, 2017Aug 27, 2017

• Vitaprint_methods

  Public
  This repository contains fabrication method protocols, developed by the Vitaprint team.

  Python

  •2•0•0•0•Updated Aug 25, 2017Aug 25, 2017

• enviro-dashboard

  Public
  Environmental monitoring (with Raspberry Pi sensors) and InfluxDB/Grafana

  Python

  •

  MIT License

  •12•0•0•0•Updated Aug 10, 2017Aug 10, 2017

• egasub

  Public
  EGASUB - ICGC EGA Submission CLI

  Python

  •

  Other

  •2•0•0•0•Updated Feb 10, 2017Feb 10, 2017

• OmicsIntegrator

  Public
  This repository is the working directory for the Garnet-Forest bundle of python scripts for analyzing diverse forms of 'omic' data in a network context.

  Python

  •

  BSD 2-Clause "Simplified" License

  •20•0•0•0•Updated Jan 5, 2017Jan 5, 2017

• seguimientoPacientes

  Public
  JavaScript

  •

  GNU General Public License v2.0

  •0•0•0•0•Updated Dec 21, 2016Dec 21, 2016

• CorEx

  Public
  CorEx or "Correlation Explanation" constructs a hierarchy of maximally informative representations of complex data.

  Python

  •

  GNU General Public License v2.0

  •54•0•0•0•Updated Nov 11, 2016Nov 11, 2016

• cual-id

  Public
  A package for creating and managing sample identifiers in comparative -omics datasets.

  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •7•0•0•0•Updated Sep 29, 2016Sep 29, 2016

• NCI60Example

  Public
  Supplement and Rcode of Figures

  6•0•0•0•Updated Jul 19, 2016Jul 19, 2016

• tutorial.450k

  Public
  A 450k tutorial in the form of an R package

  HTML

  •11•0•0•0•Updated Jul 5, 2016Jul 5, 2016

• illumina-450K-analysis

  Public
  From IDAT to beta.

  R

  •22•0•0•0•Updated Jun 30, 2016Jun 30, 2016

• easy-450k

  Public
  Automated pipeline generator for illumina 450k array analysis

  R

  •2•0•0•0•Updated Jun 16, 2016Jun 16, 2016

• pimeter

  Public
  Smart energy usage meter for Raspberry PI

  JavaScript

  •

  GNU General Public License v3.0

  •3•0•0•0•Updated May 5, 2016May 5, 2016

• kaggle-seizure-prediction

  Public
  solution for the American Epilepsy Society Seizure Prediction Challenge

  Python

  •

  MIT License

  •22•0•0•0•Updated Apr 7, 2016Apr 7, 2016

• cientifika

  Public
  Cientifika app

  JavaScript

  •

  GNU General Public License v2.0

  •0•0•0•0•Updated Jan 14, 2016Jan 14, 2016

• rnaseqtopicmodeling

  Public
  A repository for research work involving topic modeling RNA-seq data.

  OpenEdge ABL

  •3•0•0•0•Updated Dec 13, 2015Dec 13, 2015

• smartee

  Public
  Smart Plug Controller

  C

  •

  GNU General Public License v2.0

  •8•0•0•0•Updated Nov 8, 2015Nov 8, 2015

• PyMAP

  Public
  Python package for Methylation Analysis of Probes

  Python

  •

  GNU General Public License v2.0

  •1•0•0•0•Updated Oct 29, 2015Oct 29, 2015

• epibio

  Public
  R

  •3•0•0•0•Updated Aug 5, 2015Aug 5, 2015