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@OHDSI Observational Health Data Sciences and Informatics

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    312 repositories

    • Cyclops

      Public
      Cyclops (Cyclic coordinate descent for logistic, Poisson and survival analysis) is an R package for performing large scale regularized regressions.
      hades
      C++
      •32•39•19•1•Updated Dec 2, 2024Dec 2, 2024

    • SosTutorial

      Public
      R
      •0•0•0•0•Updated Dec 1, 2024Dec 1, 2024

    • DataQualityDashboard

      Public
      A tool to help improve data quality standards in observational data science.
      data-quality
      JavaScript
      •
      Apache License 2.0
      •96•145•54•6•Updated Dec 1, 2024Dec 1, 2024

    • ShinyProxyDeploy

      Public
      Deploy OHDSI Shiny apps to results.ohdsi.org
      3•0•0•0•Updated Nov 30, 2024Nov 30, 2024

    • dbt-synthea

      Public
      [Under development] A dbt ETL project to convert a Synthea synthetic data set into the OMOP CDM
      Python
      •
      Apache License 2.0
      •7•16•17•2•Updated Nov 29, 2024Nov 29, 2024

    • OmopSketch

      Public
      R
      •
      Apache License 2.0
      •0•1•23•1•Updated Nov 29, 2024Nov 29, 2024

    • PhenotypeR

      Public
      R
      •
      Apache License 2.0
      •0•1•19•1•Updated Nov 29, 2024Nov 29, 2024

    • ExampleStrategusStudyApp

      Public
      R
      •0•0•0•0•Updated Nov 29, 2024Nov 29, 2024

    • CohortConstructor

      Public
      R
      •
      Apache License 2.0
      •0•1•35•3•Updated Nov 29, 2024Nov 29, 2024

    • Glp1DiliApp

      Public
      Dockerfile
      •
      Apache License 2.0
      •0•0•0•0•Updated Nov 29, 2024Nov 29, 2024

    • SelfControlledCaseSeries

      Public
      An R package for performing Self-Controlled Case Series (SCCS) analyses in an observational database in the OMOP Common Data Model.
      hades
      R
      •8•13•11•0•Updated Nov 29, 2024Nov 29, 2024

    • CohortSymmetry

      Public
      R
      •
      Apache License 2.0
      •0•1•24•0•Updated Nov 29, 2024Nov 29, 2024

    • ETL-LambdaBuilder

      Public
      CDM Builder leveraging AWS Lambda
      C#
      •
      Apache License 2.0
      •14•14•1•2•Updated Nov 29, 2024Nov 29, 2024

    • drat

      Public
      drat repository for OHDSI R packages
      7•5•0•0•Updated Nov 29, 2024Nov 29, 2024

    • SqlRender

      Public
      This is an R package and Java library for rendering parameterized SQL, and translating it to different SQL dialects.
      hades
      R
      •
      Other
      •77•82•9•0•Updated Nov 29, 2024Nov 29, 2024

    • Vocabulary-v5.0

      Public
      Build process for the OHDSI Standardized Vocabularies. Currently not available as independent release.
      PLpgSQL
      •
      The Unlicense
      •75•223•218•11•Updated Nov 29, 2024Nov 29, 2024

    • ArachneCommons

      Public
      Commons module contains common code re-used between all Arachne components
      Java
      •8•3•1•8•Updated Nov 28, 2024Nov 28, 2024

    • OmopViewer

      Public
      R
      •
      Apache License 2.0
      •0•2•17•0•Updated Nov 28, 2024Nov 28, 2024

    • Atlas

      Public
      ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data
      JavaScript
      •
      Apache License 2.0
      •138•274•213•19•Updated Nov 27, 2024Nov 27, 2024

    • WebAPI

      Public
      OHDSI WebAPI contains all OHDSI services that can be called from OHDSI applications
      Java
      •
      Apache License 2.0
      •169•131•132•23•Updated Nov 27, 2024Nov 27, 2024

    • Strategus

      Public
      [Under development] An R packages for coordinating and executing analytics using HADES modules
      R
      •12•6•17•4•Updated Nov 27, 2024Nov 27, 2024

    • PatientLevelPrediction

      Public
      An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.
      hades
      HTML
      •89•188•69•2•Updated Nov 26, 2024Nov 26, 2024

    • Ares

      Public
      A Research Exploration System
      Vue
      •
      Apache License 2.0
      •7•12•36•2•Updated Nov 25, 2024Nov 25, 2024

    • ArachneExecutionEngine

      Public
      Arachne Execution Engine is a component used to execute remote SQL or R code. It is used by both Arachne Data Node as well as WebAPI
      PLpgSQL
      •8•8•2•2•Updated Nov 25, 2024Nov 25, 2024

    • DeepPatientLevelPrediction

      Public
      An R package for performing patient level prediction using deep learning in an observational database in the OMOP Common Data Model.
      hadesdeep-learning
      R
      •4•12•20•2•Updated Nov 25, 2024Nov 25, 2024

    • Achilles

      Public
      Automated Characterization of Health Information at Large-scale Longitudinal Evidence Systems (ACHILLES) - descriptive statistics about a OMOP CDM database
      R
      •121•131•46•5•Updated Nov 25, 2024Nov 25, 2024

    • OhdsiShinyModules

      Public
      An R package containing Shiny modules used by various OHDSI Shiny apps
      R
      •11•8•54•4•Updated Nov 22, 2024Nov 22, 2024

    • ShinyAppBuilder

      Public
      Create shiny apps using modules from OhdsiShinyModules or custom modules
      R
      •2•6•5•2•Updated Nov 22, 2024Nov 22, 2024

    • ReportGenerator

      Public
      A package that creates friendly report from results saved in an OHDSI standardized result database
      R
      •0•0•0•0•Updated Nov 22, 2024Nov 22, 2024

    • Ulysses

      Public
      Ulysses is an R package that automates setup of an OHDSI study and provides functions to assist with its maintenance and organization.
      R
      •
      Apache License 2.0
      •3•2•7•0•Updated Nov 21, 2024Nov 21, 2024