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    • Scripts, pipelines, and training materials for the AMD Southeast Region
      R
      MIT License
      1400Updated Jan 30, 2025Jan 30, 2025
    • 📦 🐳 Dockerfiles and documentation on tools for public health bioinformatics
      Dockerfile
      GNU General Public License v3.0
      1272022512Updated Jan 29, 2025Jan 29, 2025
    • Visit the site here: https://staphb.org
      SCSS
      Other
      1701Updated Aug 1, 2024Aug 1, 2024
    • Python Toolkit for using containerized programs in either Singularity or Docker
      Python
      GNU General Public License v3.0
      192621Updated Mar 19, 2024Mar 19, 2024
    • Site for AMD Midwest Region
      CSS
      GNU General Public License v3.0
      1000Updated Feb 9, 2024Feb 9, 2024
    • Site for AMD Central Region
      1000Updated Aug 23, 2023Aug 23, 2023
    • HTML
      0103Updated Apr 11, 2023Apr 11, 2023
    • mycosnp

      Public
      C. auris analysis workflow developed by the CDC translated for Nextflow
      Nextflow
      0100Updated Feb 15, 2022Feb 15, 2022
    • titan

      Public archive
      Public health bioinformatics repository for WDL workflows to analyze viral genomes.
      WDL
      GNU Affero General Public License v3.0
      1300Updated Oct 19, 2021Oct 19, 2021
    • Resource for AMD Academy
      GNU General Public License v3.0
      1000Updated Jun 18, 2020Jun 18, 2020
    • (In Development) - Plasmid searching and annotation tool for finished genome assemblies.
      Python
      GNU General Public License v3.0
      0000Updated Mar 4, 2020Mar 4, 2020
    • CDPHE

      Public
      Various pipelines and scripts used by the CO state public health lab
      Shell
      GNU General Public License v3.0
      4220Updated Jan 15, 2020Jan 15, 2020
    • Shell
      0300Updated Jul 17, 2019Jul 17, 2019
    • BRR and WFD resource pages for the Mountain Region.
      0000Updated Jul 10, 2019Jul 10, 2019
    • This document serves as a guide for State Public Health Laboratories considering hiring or working with bioinformaticians. It is currently under review with APHL and CDC.
      2300Updated Oct 15, 2018Oct 15, 2018
    15 repositories found. List is sorted by Last pushed in descending order.