Repositories list

• dpclust3p

  Public
  Dirichlet Process Clustering Pre-Processing Pipeline

  R

  •

  GNU Affero General Public License v3.0

  •10•9•7•0•Updated Feb 28, 2025Feb 28, 2025

• Gel_pan_cancer_signatures

  Public
  Comprehensive repertoire of the chromosomal alteration and mutational signatures across 16 cancer types from 10,983 cancer patients_doi.org/10.1101/2023.06.07.23290970

  Python

  •

  MIT License

  •0•0•0•8•Updated Feb 17, 2025Feb 17, 2025

• battenberg

  Public
  Battenberg R package for subclonal copynumber estimation

  R

  •

  GNU Affero General Public License v3.0

  •51•84•16•0•Updated Feb 12, 2025Feb 12, 2025

• dpclust

  Public
  Dirichlet Process based methods for subclonal reconstruction of tumours

  R

  •

  GNU Affero General Public License v3.0

  •16•29•4•1•Updated Oct 4, 2024Oct 4, 2024

• AmplificationTimeR

  Public
  Code for timing amplifications

  R

  •

  GNU General Public License v3.0

  •1•3•2•0•Updated Jun 6, 2024Jun 6, 2024

• AmplificationTimeR_paper_archive

  Public archive
  A repository to store any code that was run as part of the AmplificationTimeR publication.

  HTML

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Apr 25, 2024Apr 25, 2024

• PhaDPClust

  Public
  PhaDPClust

  R

  •0•0•0•0•Updated Nov 27, 2022Nov 27, 2022

• InUtero_MPN

  Public archive
  Code accompanying 'In utero origin of myelofibrosis presenting in adult monozygotic twins' (Sousos, Ní Leathlobhair, et al., Nature Medicine, 2022). See https://www.nature.com/articles/s41591-022-01793-4

  R

  •0•1•0•0•Updated Aug 1, 2022Aug 1, 2022

• dpclust_smchet_docker

  Public
  DPClust subclonal architecture calling Docker pipeline for SMC-het

  R

  •

  GNU General Public License v3.0

  •2•0•0•0•Updated Jul 4, 2017Jul 4, 2017